Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0893 and Dshi_0894 are separated by 216 nucleotides Dshi_0894 and Dshi_0895 are separated by 389 nucleotides
Dshi_0893: Dshi_0893 - Peptidoglycan-binding domain 1 protein (RefSeq), at 909,083 to 910,375
_0893
Dshi_0894: Dshi_0894 - Peptidoglycan-binding domain 1 protein (RefSeq), at 910,592 to 911,965
_0894
Dshi_0895: Dshi_0895 - peptidase S1 and S6 chymotrypsin/Hap (RefSeq), at 912,355 to 914,220
_0895
Position (kb) 910
911
912 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 909.635 kb on + strand, within Dshi_0893 at 909.643 kb on - strand, within Dshi_0893 at 909.643 kb on - strand, within Dshi_0893 at 909.704 kb on - strand, within Dshi_0893 at 909.722 kb on + strand, within Dshi_0893 at 909.732 kb on + strand, within Dshi_0893 at 909.796 kb on + strand, within Dshi_0893 at 909.804 kb on - strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.830 kb on + strand, within Dshi_0893 at 909.835 kb on + strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.838 kb on - strand, within Dshi_0893 at 909.855 kb on + strand, within Dshi_0893 at 909.913 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.950 kb on + strand, within Dshi_0893 at 909.958 kb on - strand, within Dshi_0893 at 909.960 kb on + strand, within Dshi_0893 at 909.969 kb on + strand, within Dshi_0893 at 910.032 kb on - strand, within Dshi_0893 at 910.034 kb on + strand, within Dshi_0893 at 910.042 kb on - strand, within Dshi_0893 at 910.072 kb on + strand, within Dshi_0893 at 910.080 kb on - strand, within Dshi_0893 at 910.146 kb on + strand, within Dshi_0893 at 910.147 kb on + strand, within Dshi_0893 at 910.152 kb on + strand, within Dshi_0893 at 910.160 kb on + strand, within Dshi_0893 at 910.319 kb on + strand at 910.319 kb on + strand at 910.327 kb on - strand at 910.350 kb on + strand at 910.358 kb on - strand at 910.358 kb on - strand at 910.360 kb on + strand at 910.368 kb on - strand at 910.368 kb on - strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.370 kb on + strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.378 kb on - strand at 910.385 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.391 kb on + strand at 910.395 kb on + strand at 910.397 kb on + strand at 910.397 kb on + strand at 910.397 kb on + strand at 910.399 kb on - strand at 910.399 kb on - strand at 910.401 kb on - strand at 910.402 kb on + strand at 910.405 kb on - strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.436 kb on + strand at 910.441 kb on + strand at 910.442 kb on - strand at 910.444 kb on - strand at 910.446 kb on + strand at 910.482 kb on - strand at 910.534 kb on + strand at 910.542 kb on - strand at 910.542 kb on - strand at 910.547 kb on + strand at 910.547 kb on + strand at 910.547 kb on + strand at 910.554 kb on + strand at 910.555 kb on - strand at 910.582 kb on + strand at 910.590 kb on - strand at 910.613 kb on + strand at 910.613 kb on + strand at 910.613 kb on + strand at 910.618 kb on + strand at 910.618 kb on + strand at 910.618 kb on + strand at 910.620 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on + strand at 910.626 kb on - strand at 910.626 kb on - strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.628 kb on + strand at 910.636 kb on + strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.636 kb on - strand at 910.637 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.638 kb on + strand at 910.644 kb on - strand at 910.644 kb on - strand at 910.645 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.646 kb on - strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.651 kb on + strand at 910.659 kb on - strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.661 kb on + strand at 910.669 kb on - strand at 910.669 kb on - strand at 910.669 kb on - strand at 910.684 kb on + strand at 910.685 kb on + strand at 910.685 kb on + strand at 910.705 kb on - strand at 910.708 kb on - strand at 910.713 kb on + strand at 910.724 kb on + strand at 910.737 kb on - strand, within Dshi_0894 at 910.739 kb on + strand, within Dshi_0894 at 910.747 kb on - strand, within Dshi_0894 at 910.747 kb on - strand, within Dshi_0894 at 910.750 kb on + strand, within Dshi_0894 at 910.750 kb on + strand, within Dshi_0894 at 910.755 kb on + strand, within Dshi_0894 at 910.783 kb on + strand, within Dshi_0894 at 910.784 kb on + strand, within Dshi_0894 at 910.794 kb on + strand, within Dshi_0894 at 910.802 kb on + strand, within Dshi_0894 at 910.809 kb on + strand, within Dshi_0894 at 910.833 kb on + strand, within Dshi_0894 at 910.876 kb on + strand, within Dshi_0894 at 910.877 kb on + strand, within Dshi_0894 at 910.926 kb on - strand, within Dshi_0894 at 910.933 kb on - strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.941 kb on + strand, within Dshi_0894 at 910.947 kb on + strand, within Dshi_0894 at 910.955 kb on + strand, within Dshi_0894 at 910.975 kb on - strand, within Dshi_0894 at 910.977 kb on + strand, within Dshi_0894 at 911.002 kb on + strand, within Dshi_0894 at 911.002 kb on + strand, within Dshi_0894 at 911.010 kb on - strand, within Dshi_0894 at 911.014 kb on + strand, within Dshi_0894 at 911.030 kb on + strand, within Dshi_0894 at 911.030 kb on + strand, within Dshi_0894 at 911.042 kb on + strand, within Dshi_0894 at 911.057 kb on + strand, within Dshi_0894 at 911.067 kb on + strand, within Dshi_0894 at 911.106 kb on - strand, within Dshi_0894 at 911.129 kb on + strand, within Dshi_0894 at 911.137 kb on + strand, within Dshi_0894 at 911.158 kb on + strand, within Dshi_0894 at 911.158 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.166 kb on - strand, within Dshi_0894 at 911.179 kb on - strand, within Dshi_0894 at 911.264 kb on + strand, within Dshi_0894 at 911.280 kb on + strand, within Dshi_0894 at 911.281 kb on - strand, within Dshi_0894 at 911.291 kb on - strand, within Dshi_0894 at 911.348 kb on + strand, within Dshi_0894 at 911.424 kb on + strand, within Dshi_0894 at 911.425 kb on - strand, within Dshi_0894 at 911.425 kb on - strand, within Dshi_0894 at 911.430 kb on - strand, within Dshi_0894 at 911.435 kb on - strand, within Dshi_0894 at 911.594 kb on + strand, within Dshi_0894 at 911.611 kb on + strand, within Dshi_0894 at 911.648 kb on + strand, within Dshi_0894 at 911.669 kb on + strand, within Dshi_0894 at 911.677 kb on - strand, within Dshi_0894 at 911.695 kb on + strand, within Dshi_0894 at 911.698 kb on - strand, within Dshi_0894 at 911.708 kb on - strand, within Dshi_0894 at 911.708 kb on - strand, within Dshi_0894 at 911.732 kb on + strand, within Dshi_0894 at 911.773 kb on + strand, within Dshi_0894 at 911.795 kb on + strand, within Dshi_0894 at 911.801 kb on - strand, within Dshi_0894 at 911.860 kb on + strand at 912.024 kb on - strand at 912.150 kb on - strand at 912.211 kb on + strand at 912.219 kb on - strand at 912.219 kb on - strand at 912.255 kb on - strand at 912.289 kb on - strand at 912.290 kb on - strand at 912.334 kb on - strand at 912.354 kb on - strand at 912.476 kb on - strand at 912.662 kb on - strand, within Dshi_0895 at 912.782 kb on - strand, within Dshi_0895 at 912.816 kb on + strand, within Dshi_0895 at 912.824 kb on - strand, within Dshi_0895 at 912.826 kb on - strand, within Dshi_0895 at 912.826 kb on - strand, within Dshi_0895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 909,635 + Dshi_0893 0.43 -2.6 909,643 - Dshi_0893 0.43 +1.8 909,643 - Dshi_0893 0.43 +2.4 909,704 - Dshi_0893 0.48 +0.1 909,722 + Dshi_0893 0.49 -2.4 909,732 + Dshi_0893 0.50 +2.2 909,796 + Dshi_0893 0.55 +0.4 909,804 - Dshi_0893 0.56 -0.3 909,830 + Dshi_0893 0.58 -1.8 909,830 + Dshi_0893 0.58 -0.6 909,830 + Dshi_0893 0.58 +0.9 909,830 + Dshi_0893 0.58 -3.1 909,830 + Dshi_0893 0.58 +1.1 909,835 + Dshi_0893 0.58 -0.7 909,838 - Dshi_0893 0.58 +1.4 909,838 - Dshi_0893 0.58 -0.0 909,838 - Dshi_0893 0.58 -2.0 909,855 + Dshi_0893 0.60 -2.1 909,913 + Dshi_0893 0.64 +2.0 909,950 + Dshi_0893 0.67 +0.4 909,950 + Dshi_0893 0.67 -2.6 909,950 + Dshi_0893 0.67 -1.0 909,950 + Dshi_0893 0.67 -1.9 909,958 - Dshi_0893 0.68 +0.4 909,960 + Dshi_0893 0.68 -1.5 909,969 + Dshi_0893 0.69 +0.4 910,032 - Dshi_0893 0.73 +2.1 910,034 + Dshi_0893 0.74 -2.6 910,042 - Dshi_0893 0.74 -2.2 910,072 + Dshi_0893 0.76 -2.2 910,080 - Dshi_0893 0.77 +0.4 910,146 + Dshi_0893 0.82 -2.9 910,147 + Dshi_0893 0.82 -0.8 910,152 + Dshi_0893 0.83 +0.4 910,160 + Dshi_0893 0.83 -1.8 910,319 + -1.9 910,319 + +0.0 910,327 - +3.4 910,350 + +0.8 910,358 - +0.1 910,358 - -0.9 910,360 + -1.7 910,368 - +0.3 910,368 - -1.6 910,370 + -1.2 910,370 + -1.6 910,370 + -2.6 910,370 + -0.6 910,370 + -2.4 910,378 - -0.4 910,378 - -1.5 910,378 - -1.2 910,378 - -2.6 910,378 - -1.2 910,385 + -2.9 910,391 + +0.4 910,391 + +0.4 910,391 + +0.8 910,391 + +0.4 910,395 + -0.0 910,397 + -1.0 910,397 + +0.7 910,397 + -2.2 910,399 - +1.1 910,399 - -0.2 910,401 - -2.7 910,402 + +1.0 910,405 - -1.1 910,436 + -3.2 910,436 + -0.2 910,436 + +0.1 910,436 + -0.9 910,441 + -0.5 910,442 - -0.6 910,444 - +1.0 910,446 + -0.3 910,482 - -0.6 910,534 + -0.2 910,542 - +0.4 910,542 - -1.6 910,547 + -1.5 910,547 + -1.6 910,547 + -0.0 910,554 + +0.4 910,555 - -4.1 910,582 + -0.6 910,590 - +3.0 910,613 + -1.0 910,613 + -0.9 910,613 + +0.0 910,618 + -0.1 910,618 + -2.0 910,618 + -1.9 910,620 + -1.9 910,626 + -0.1 910,626 + -1.7 910,626 + -1.9 910,626 + -1.9 910,626 - -0.8 910,626 - -1.3 910,628 + +0.4 910,628 + -3.3 910,628 + -0.7 910,628 + -0.6 910,628 + +2.0 910,628 + -2.2 910,628 + -1.3 910,628 + -1.2 910,636 + +0.5 910,636 - -0.1 910,636 - +0.7 910,636 - +0.2 910,636 - +1.7 910,636 - -0.5 910,636 - -0.6 910,637 + -2.1 910,638 + -0.6 910,638 + +0.4 910,638 + -2.9 910,638 + -0.8 910,638 + -2.0 910,638 + +0.4 910,638 + -2.9 910,638 + -2.8 910,638 + -0.5 910,638 + -1.1 910,638 + -1.1 910,638 + +1.0 910,638 + +2.0 910,638 + -0.4 910,638 + -2.2 910,638 + -1.1 910,638 + -1.6 910,638 + -1.6 910,644 - +2.4 910,644 - -0.9 910,645 - +0.4 910,646 - -0.9 910,646 - -1.4 910,646 - -0.6 910,646 - +0.4 910,646 - -2.6 910,646 - -0.0 910,651 + +0.4 910,651 + +2.7 910,651 + +0.4 910,651 + +0.4 910,651 + -1.6 910,651 + -1.4 910,659 - -1.5 910,661 + -1.0 910,661 + +0.8 910,661 + -1.2 910,661 + -3.7 910,661 + -2.4 910,661 + -1.6 910,661 + +1.2 910,669 - -2.6 910,669 - -1.0 910,669 - +0.5 910,684 + -1.2 910,685 + -2.2 910,685 + -1.6 910,705 - -4.6 910,708 - +0.4 910,713 + -1.2 910,724 + +0.4 910,737 - Dshi_0894 0.11 +2.4 910,739 + Dshi_0894 0.11 -1.7 910,747 - Dshi_0894 0.11 -1.0 910,747 - Dshi_0894 0.11 -3.1 910,750 + Dshi_0894 0.11 +0.9 910,750 + Dshi_0894 0.11 +0.4 910,755 + Dshi_0894 0.12 -0.8 910,783 + Dshi_0894 0.14 -2.2 910,784 + Dshi_0894 0.14 -0.6 910,794 + Dshi_0894 0.15 -1.6 910,802 + Dshi_0894 0.15 +0.4 910,809 + Dshi_0894 0.16 -1.4 910,833 + Dshi_0894 0.18 -0.8 910,876 + Dshi_0894 0.21 -0.5 910,877 + Dshi_0894 0.21 -0.6 910,926 - Dshi_0894 0.24 +0.4 910,933 - Dshi_0894 0.25 +0.4 910,941 + Dshi_0894 0.25 -1.1 910,941 + Dshi_0894 0.25 -0.8 910,941 + Dshi_0894 0.25 -0.6 910,941 + Dshi_0894 0.25 -0.1 910,947 + Dshi_0894 0.26 -0.6 910,955 + Dshi_0894 0.26 -0.5 910,975 - Dshi_0894 0.28 -0.1 910,977 + Dshi_0894 0.28 -2.9 911,002 + Dshi_0894 0.30 -2.1 911,002 + Dshi_0894 0.30 -0.4 911,010 - Dshi_0894 0.30 -2.6 911,014 + Dshi_0894 0.31 +0.4 911,030 + Dshi_0894 0.32 +1.4 911,030 + Dshi_0894 0.32 -0.6 911,042 + Dshi_0894 0.33 +0.2 911,057 + Dshi_0894 0.34 -1.4 911,067 + Dshi_0894 0.35 -3.7 911,106 - Dshi_0894 0.37 -0.6 911,129 + Dshi_0894 0.39 -1.9 911,137 + Dshi_0894 0.40 -1.1 911,158 + Dshi_0894 0.41 -1.9 911,158 - Dshi_0894 0.41 +1.4 911,166 - Dshi_0894 0.42 -2.0 911,166 - Dshi_0894 0.42 +1.6 911,166 - Dshi_0894 0.42 +0.3 911,179 - Dshi_0894 0.43 +0.3 911,264 + Dshi_0894 0.49 -3.3 911,280 + Dshi_0894 0.50 +0.8 911,281 - Dshi_0894 0.50 -1.9 911,291 - Dshi_0894 0.51 -1.2 911,348 + Dshi_0894 0.55 -2.8 911,424 + Dshi_0894 0.61 +1.4 911,425 - Dshi_0894 0.61 -0.8 911,425 - Dshi_0894 0.61 +2.0 911,430 - Dshi_0894 0.61 -1.6 911,435 - Dshi_0894 0.61 +2.0 911,594 + Dshi_0894 0.73 -1.2 911,611 + Dshi_0894 0.74 -0.6 911,648 + Dshi_0894 0.77 -0.6 911,669 + Dshi_0894 0.78 -0.6 911,677 - Dshi_0894 0.79 -1.2 911,695 + Dshi_0894 0.80 -2.9 911,698 - Dshi_0894 0.80 -2.9 911,708 - Dshi_0894 0.81 -2.8 911,708 - Dshi_0894 0.81 -0.6 911,732 + Dshi_0894 0.83 -1.9 911,773 + Dshi_0894 0.86 +0.1 911,795 + Dshi_0894 0.88 +1.1 911,801 - Dshi_0894 0.88 -1.7 911,860 + +0.2 912,024 - -1.4 912,150 - +0.4 912,211 + -0.4 912,219 - -1.2 912,219 - -1.0 912,255 - +0.4 912,289 - -1.6 912,290 - +1.6 912,334 - +1.4 912,354 - +0.4 912,476 - +0.4 912,662 - Dshi_0895 0.16 +2.0 912,782 - Dshi_0895 0.23 +2.0 912,816 + Dshi_0895 0.25 +0.4 912,824 - Dshi_0895 0.25 +0.4 912,826 - Dshi_0895 0.25 +0.4 912,826 - Dshi_0895 0.25 +2.0
Or see this region's nucleotide sequence