Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0880 and Dshi_0881 are separated by 146 nucleotides Dshi_0881 and Dshi_0882 are separated by 1 nucleotides Dshi_0882 and Dshi_0883 are separated by 4 nucleotides
Dshi_0880: Dshi_0880 - Hydratase/decarboxylase (RefSeq), at 895,664 to 896,512
_0880
Dshi_0881: Dshi_0881 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 896,659 to 897,645
_0881
Dshi_0882: Dshi_0882 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 897,647 to 898,615
_0882
Dshi_0883: Dshi_0883 - hypothetical protein (RefSeq), at 898,620 to 898,811
_0883
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.680 kb on + strand at 895.692 kb on + strand at 895.700 kb on - strand at 895.702 kb on + strand at 895.710 kb on - strand at 895.735 kb on - strand at 895.786 kb on - strand, within Dshi_0880 at 895.789 kb on + strand, within Dshi_0880 at 895.796 kb on + strand, within Dshi_0880 at 895.797 kb on - strand, within Dshi_0880 at 895.814 kb on - strand, within Dshi_0880 at 895.837 kb on - strand, within Dshi_0880 at 895.849 kb on - strand, within Dshi_0880 at 895.849 kb on - strand, within Dshi_0880 at 895.898 kb on - strand, within Dshi_0880 at 895.898 kb on - strand, within Dshi_0880 at 895.983 kb on + strand, within Dshi_0880 at 895.991 kb on - strand, within Dshi_0880 at 896.036 kb on + strand, within Dshi_0880 at 896.039 kb on - strand, within Dshi_0880 at 896.107 kb on - strand, within Dshi_0880 at 896.107 kb on - strand, within Dshi_0880 at 896.138 kb on + strand, within Dshi_0880 at 896.169 kb on + strand, within Dshi_0880 at 896.177 kb on - strand, within Dshi_0880 at 896.182 kb on - strand, within Dshi_0880 at 896.182 kb on - strand, within Dshi_0880 at 896.185 kb on + strand, within Dshi_0880 at 896.273 kb on + strand, within Dshi_0880 at 896.286 kb on - strand, within Dshi_0880 at 896.297 kb on - strand, within Dshi_0880 at 896.301 kb on - strand, within Dshi_0880 at 896.331 kb on + strand, within Dshi_0880 at 896.368 kb on + strand, within Dshi_0880 at 896.429 kb on - strand at 896.449 kb on - strand at 896.463 kb on - strand at 896.468 kb on - strand at 896.472 kb on - strand at 896.490 kb on + strand at 896.525 kb on - strand at 896.544 kb on + strand at 896.589 kb on + strand at 896.604 kb on + strand at 896.611 kb on - strand at 896.648 kb on + strand at 896.706 kb on + strand at 896.709 kb on - strand at 896.719 kb on - strand at 896.817 kb on + strand, within Dshi_0881 at 896.972 kb on - strand, within Dshi_0881 at 896.972 kb on - strand, within Dshi_0881 at 896.972 kb on - strand, within Dshi_0881 at 897.309 kb on + strand, within Dshi_0881 at 897.375 kb on + strand, within Dshi_0881 at 897.381 kb on - strand, within Dshi_0881 at 897.473 kb on + strand, within Dshi_0881 at 897.541 kb on - strand, within Dshi_0881 at 897.777 kb on - strand, within Dshi_0882 at 897.863 kb on - strand, within Dshi_0882 at 897.891 kb on + strand, within Dshi_0882 at 897.940 kb on + strand, within Dshi_0882 at 898.029 kb on + strand, within Dshi_0882 at 898.031 kb on - strand, within Dshi_0882 at 898.065 kb on + strand, within Dshi_0882 at 898.228 kb on - strand, within Dshi_0882 at 898.262 kb on + strand, within Dshi_0882 at 898.317 kb on + strand, within Dshi_0882 at 898.351 kb on - strand, within Dshi_0882 at 898.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 895,680 + -0.3 895,692 + +0.1 895,700 - +0.4 895,702 + -2.9 895,710 - +0.5 895,735 - -1.2 895,786 - Dshi_0880 0.14 -0.2 895,789 + Dshi_0880 0.15 -3.2 895,796 + Dshi_0880 0.16 -1.6 895,797 - Dshi_0880 0.16 +1.4 895,814 - Dshi_0880 0.18 -1.6 895,837 - Dshi_0880 0.20 +1.4 895,849 - Dshi_0880 0.22 -1.9 895,849 - Dshi_0880 0.22 -2.4 895,898 - Dshi_0880 0.28 -3.6 895,898 - Dshi_0880 0.28 -0.6 895,983 + Dshi_0880 0.38 -1.2 895,991 - Dshi_0880 0.39 +2.0 896,036 + Dshi_0880 0.44 -1.6 896,039 - Dshi_0880 0.44 -0.6 896,107 - Dshi_0880 0.52 -0.6 896,107 - Dshi_0880 0.52 -2.1 896,138 + Dshi_0880 0.56 -2.0 896,169 + Dshi_0880 0.59 -1.0 896,177 - Dshi_0880 0.60 -1.0 896,182 - Dshi_0880 0.61 -0.6 896,182 - Dshi_0880 0.61 -0.7 896,185 + Dshi_0880 0.61 +0.1 896,273 + Dshi_0880 0.72 +1.0 896,286 - Dshi_0880 0.73 +0.4 896,297 - Dshi_0880 0.75 +0.7 896,301 - Dshi_0880 0.75 -2.3 896,331 + Dshi_0880 0.79 -0.4 896,368 + Dshi_0880 0.83 -2.1 896,429 - -2.0 896,449 - +1.0 896,463 - -2.2 896,468 - -3.1 896,472 - -2.4 896,490 + -0.3 896,525 - -1.6 896,544 + -1.0 896,589 + -0.2 896,604 + -0.8 896,611 - +1.1 896,648 + -1.6 896,706 + +1.2 896,709 - +0.2 896,719 - -1.6 896,817 + Dshi_0881 0.16 -2.4 896,972 - Dshi_0881 0.32 -2.2 896,972 - Dshi_0881 0.32 -1.1 896,972 - Dshi_0881 0.32 -2.4 897,309 + Dshi_0881 0.66 -1.4 897,375 + Dshi_0881 0.73 -2.3 897,381 - Dshi_0881 0.73 -0.9 897,473 + Dshi_0881 0.82 -0.5 897,541 - Dshi_0881 0.89 -1.9 897,777 - Dshi_0882 0.13 -0.6 897,863 - Dshi_0882 0.22 -0.6 897,891 + Dshi_0882 0.25 -2.4 897,940 + Dshi_0882 0.30 +2.0 898,029 + Dshi_0882 0.39 -3.4 898,031 - Dshi_0882 0.40 -0.6 898,065 + Dshi_0882 0.43 +1.7 898,228 - Dshi_0882 0.60 -0.7 898,262 + Dshi_0882 0.63 -0.2 898,317 + Dshi_0882 0.69 -1.8 898,351 - Dshi_0882 0.73 +0.3 898,562 - +2.7
Or see this region's nucleotide sequence