Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0781

Experiment: m.b. Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_R0019 and Dshi_0780 are separated by 18 nucleotidesDshi_0780 and Dshi_0781 are separated by 4 nucleotidesDshi_0781 and Dshi_0782 are separated by 73 nucleotidesDshi_0782 and Dshi_0783 are separated by 46 nucleotides Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674 _R0019 Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637 _0780 Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929 _0781 Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569 _0782 Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579 _0783 Position (kb) 786 787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 785.891 kb on + strand, within Dshi_0780at 785.896 kb on + strand, within Dshi_0780at 785.899 kb on - strand, within Dshi_0780at 785.899 kb on - strand, within Dshi_0780at 785.901 kb on + strand, within Dshi_0780at 785.904 kb on - strand, within Dshi_0780at 785.909 kb on - strand, within Dshi_0780at 785.957 kb on - strand, within Dshi_0780at 785.999 kb on - strand, within Dshi_0780at 786.014 kb on - strand, within Dshi_0780at 786.041 kb on - strandat 786.084 kb on - strand, within Dshi_0780at 786.180 kb on + strand, within Dshi_0780at 786.180 kb on + strand, within Dshi_0780at 786.192 kb on + strand, within Dshi_0780at 786.194 kb on + strand, within Dshi_0780at 786.198 kb on - strand, within Dshi_0780at 786.274 kb on + strand, within Dshi_0780at 786.362 kb on + strand, within Dshi_0780at 786.370 kb on - strand, within Dshi_0780at 786.406 kb on - strand, within Dshi_0780at 786.523 kb on - strand, within Dshi_0780at 786.600 kb on + strandat 786.621 kb on + strandat 787.008 kb on + strandat 787.018 kb on + strandat 787.026 kb on + strandat 787.081 kb on + strand, within Dshi_0782at 787.081 kb on + strand, within Dshi_0782at 787.081 kb on + strand, within Dshi_0782at 787.175 kb on - strand, within Dshi_0782at 787.256 kb on - strand, within Dshi_0782at 787.319 kb on - strand, within Dshi_0782at 787.319 kb on - strand, within Dshi_0782at 787.333 kb on + strand, within Dshi_0782at 787.366 kb on - strand, within Dshi_0782at 787.385 kb on + strand, within Dshi_0782at 787.405 kb on - strand, within Dshi_0782at 787.463 kb on - strand, within Dshi_0782at 787.563 kb on + strandat 787.576 kb on - strandat 787.604 kb on + strandat 787.606 kb on + strandat 787.664 kb on + strandat 787.672 kb on + strandat 787.733 kb on - strandat 787.801 kb on - strandat 787.801 kb on - strandat 787.850 kb on + strandat 787.903 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
remove
785,891 + Dshi_0780 0.21 +0.9
785,896 + Dshi_0780 0.21 -1.8
785,899 - Dshi_0780 0.22 -0.6
785,899 - Dshi_0780 0.22 -0.7
785,901 + Dshi_0780 0.22 -0.5
785,904 - Dshi_0780 0.22 -1.2
785,909 - Dshi_0780 0.23 -0.1
785,957 - Dshi_0780 0.28 -1.5
785,999 - Dshi_0780 0.32 -1.1
786,014 - Dshi_0780 0.34 +0.5
786,041 - +0.5
786,084 - Dshi_0780 0.41 +0.5
786,180 + Dshi_0780 0.52 +0.5
786,180 + Dshi_0780 0.52 -0.7
786,192 + Dshi_0780 0.53 -0.7
786,194 + Dshi_0780 0.53 -1.8
786,198 - Dshi_0780 0.53 -1.7
786,274 + Dshi_0780 0.61 -0.1
786,362 + Dshi_0780 0.71 +0.5
786,370 - Dshi_0780 0.72 -0.8
786,406 - Dshi_0780 0.75 +2.1
786,523 - Dshi_0780 0.88 +2.1
786,600 + -0.1
786,621 + -2.4
787,008 + +0.7
787,018 + +1.3
787,026 + -1.6
787,081 + Dshi_0782 0.14 -0.9
787,081 + Dshi_0782 0.14 -1.6
787,081 + Dshi_0782 0.14 -2.0
787,175 - Dshi_0782 0.30 -2.5
787,256 - Dshi_0782 0.45 -1.3
787,319 - Dshi_0782 0.56 +0.5
787,319 - Dshi_0782 0.56 -1.8
787,333 + Dshi_0782 0.58 +2.6
787,366 - Dshi_0782 0.64 -0.4
787,385 + Dshi_0782 0.67 -0.7
787,405 - Dshi_0782 0.71 -1.7
787,463 - Dshi_0782 0.81 +1.8
787,563 + -0.7
787,576 - +1.3
787,604 + -3.8
787,606 + -1.5
787,664 + +0.5
787,672 + +1.5
787,733 - +0.0
787,801 - -1.3
787,801 - -0.8
787,850 + +0.5
787,903 - +2.5

Or see this region's nucleotide sequence