Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0771 and Dshi_0772 overlap by 7 nucleotides Dshi_0772 and Dshi_0773 overlap by 4 nucleotides Dshi_0773 and Dshi_0774 are separated by 42 nucleotides Dshi_0774 and Dshi_0775 are separated by 548 nucleotides
Dshi_0771: Dshi_0771 - DoxX family protein (RefSeq), at 776,904 to 777,470
_0771
Dshi_0772: Dshi_0772 - hypothetical protein (RefSeq), at 777,464 to 778,210
_0772
Dshi_0773: Dshi_0773 - protein of unknown function DUF692 (RefSeq), at 778,207 to 779,157
_0773
Dshi_0774: Dshi_0774 - hypothetical protein (RefSeq), at 779,200 to 779,487
_0774
Dshi_0775: Dshi_0775 - tartrate dehydrogenase (RefSeq), at 780,036 to 781,115
_0775
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 777.223 kb on + strand, within Dshi_0771 at 777.274 kb on - strand, within Dshi_0771 at 777.285 kb on + strand, within Dshi_0771 at 777.321 kb on + strand, within Dshi_0771 at 777.466 kb on + strand at 777.467 kb on + strand at 777.468 kb on + strand at 777.516 kb on + strand at 777.557 kb on + strand, within Dshi_0772 at 777.565 kb on - strand, within Dshi_0772 at 777.594 kb on + strand, within Dshi_0772 at 777.760 kb on + strand, within Dshi_0772 at 777.787 kb on + strand, within Dshi_0772 at 777.905 kb on - strand, within Dshi_0772 at 777.977 kb on - strand, within Dshi_0772 at 778.007 kb on + strand, within Dshi_0772 at 778.079 kb on - strand, within Dshi_0772 at 778.094 kb on - strand, within Dshi_0772 at 778.345 kb on + strand, within Dshi_0773 at 778.433 kb on + strand, within Dshi_0773 at 778.509 kb on - strand, within Dshi_0773 at 778.623 kb on + strand, within Dshi_0773 at 778.654 kb on + strand, within Dshi_0773 at 778.664 kb on + strand, within Dshi_0773 at 778.664 kb on + strand, within Dshi_0773 at 778.712 kb on + strand, within Dshi_0773 at 778.720 kb on - strand, within Dshi_0773 at 778.720 kb on - strand, within Dshi_0773 at 778.750 kb on + strand, within Dshi_0773 at 778.830 kb on + strand, within Dshi_0773 at 778.843 kb on - strand, within Dshi_0773 at 778.848 kb on - strand, within Dshi_0773 at 778.901 kb on + strand, within Dshi_0773 at 778.901 kb on + strand, within Dshi_0773 at 778.907 kb on + strand, within Dshi_0773 at 779.256 kb on + strand, within Dshi_0774 at 779.324 kb on - strand, within Dshi_0774 at 779.335 kb on + strand, within Dshi_0774 at 779.410 kb on - strand, within Dshi_0774 at 779.415 kb on - strand, within Dshi_0774 at 779.417 kb on + strand, within Dshi_0774 at 779.431 kb on + strand, within Dshi_0774 at 779.439 kb on - strand, within Dshi_0774 at 779.460 kb on + strand at 779.522 kb on + strand at 779.530 kb on - strand at 779.695 kb on - strand at 779.706 kb on + strand at 779.706 kb on + strand at 779.714 kb on - strand at 779.733 kb on + strand at 779.804 kb on + strand at 779.814 kb on + strand at 779.836 kb on - strand at 779.836 kb on - strand at 779.870 kb on + strand at 779.878 kb on - strand at 779.908 kb on + strand at 779.963 kb on + strand at 779.963 kb on + strand at 780.105 kb on - strand at 780.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 777,223 + Dshi_0771 0.56 -1.3 777,274 - Dshi_0771 0.65 -2.3 777,285 + Dshi_0771 0.67 -2.1 777,321 + Dshi_0771 0.74 -0.5 777,466 + -0.5 777,467 + +1.5 777,468 + +0.5 777,516 + -1.8 777,557 + Dshi_0772 0.12 +2.1 777,565 - Dshi_0772 0.14 +0.5 777,594 + Dshi_0772 0.17 -0.4 777,760 + Dshi_0772 0.40 -3.6 777,787 + Dshi_0772 0.43 -1.0 777,905 - Dshi_0772 0.59 -2.4 777,977 - Dshi_0772 0.69 -2.5 778,007 + Dshi_0772 0.73 -0.1 778,079 - Dshi_0772 0.82 -2.1 778,094 - Dshi_0772 0.84 +3.1 778,345 + Dshi_0773 0.15 -0.6 778,433 + Dshi_0773 0.24 -3.0 778,509 - Dshi_0773 0.32 +0.7 778,623 + Dshi_0773 0.44 +0.8 778,654 + Dshi_0773 0.47 +2.3 778,664 + Dshi_0773 0.48 +0.5 778,664 + Dshi_0773 0.48 +0.1 778,712 + Dshi_0773 0.53 +0.2 778,720 - Dshi_0773 0.54 -2.1 778,720 - Dshi_0773 0.54 -0.5 778,750 + Dshi_0773 0.57 +0.5 778,830 + Dshi_0773 0.66 -0.1 778,843 - Dshi_0773 0.67 -0.7 778,848 - Dshi_0773 0.67 -0.7 778,901 + Dshi_0773 0.73 +0.5 778,901 + Dshi_0773 0.73 -3.6 778,907 + Dshi_0773 0.74 +1.5 779,256 + Dshi_0774 0.19 +1.0 779,324 - Dshi_0774 0.43 -0.1 779,335 + Dshi_0774 0.47 +0.3 779,410 - Dshi_0774 0.73 -2.3 779,415 - Dshi_0774 0.75 +0.5 779,417 + Dshi_0774 0.75 +1.5 779,431 + Dshi_0774 0.80 +1.5 779,439 - Dshi_0774 0.83 -0.0 779,460 + -0.7 779,522 + -0.5 779,530 - +0.5 779,695 - -1.3 779,706 + -1.8 779,706 + +2.1 779,714 - -2.4 779,733 + +2.8 779,804 + +0.3 779,814 + +0.5 779,836 - -0.7 779,836 - -1.2 779,870 + +2.1 779,878 - +0.5 779,908 + -1.3 779,963 + -0.4 779,963 + -0.4 780,105 - -1.2 780,136 + +1.5
Or see this region's nucleotide sequence