Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0717

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0716 and Dshi_0717 are separated by 60 nucleotidesDshi_0717 and Dshi_0718 are separated by 349 nucleotides Dshi_0716: Dshi_0716 - transcriptional regulator, XRE family (RefSeq), at 723,225 to 724,619 _0716 Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906 _0717 Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 726,256 to 727,788 _0718 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 723.811 kb on + strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.885 kb on - strand, within Dshi_0716at 723.892 kb on - strand, within Dshi_0716at 723.993 kb on + strand, within Dshi_0716at 724.041 kb on + strand, within Dshi_0716at 724.049 kb on - strand, within Dshi_0716at 724.073 kb on + strand, within Dshi_0716at 724.142 kb on - strand, within Dshi_0716at 724.163 kb on + strand, within Dshi_0716at 724.181 kb on + strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.189 kb on - strand, within Dshi_0716at 724.191 kb on + strand, within Dshi_0716at 724.192 kb on + strand, within Dshi_0716at 724.199 kb on - strand, within Dshi_0716at 724.234 kb on - strand, within Dshi_0716at 724.265 kb on - strand, within Dshi_0716at 724.425 kb on - strand, within Dshi_0716at 724.479 kb on - strand, within Dshi_0716at 724.491 kb on + strandat 724.787 kb on + strandat 724.986 kb on + strandat 724.994 kb on - strand, within Dshi_0717at 725.004 kb on + strand, within Dshi_0717at 725.055 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.182 kb on - strand, within Dshi_0717at 725.266 kb on + strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.341 kb on - strand, within Dshi_0717at 725.467 kb on + strand, within Dshi_0717at 725.507 kb on + strand, within Dshi_0717at 725.518 kb on - strand, within Dshi_0717at 725.597 kb on - strand, within Dshi_0717at 725.615 kb on + strand, within Dshi_0717at 725.745 kb on + strand, within Dshi_0717at 725.745 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.848 kb on - strandat 725.863 kb on + strandat 725.871 kb on + strandat 725.908 kb on + strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.979 kb on + strandat 726.005 kb on - strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.226 kb on - strandat 726.253 kb on - strandat 726.255 kb on + strandat 726.422 kb on - strand, within Dshi_0718at 726.459 kb on - strand, within Dshi_0718at 726.533 kb on + strand, within Dshi_0718at 726.538 kb on + strand, within Dshi_0718at 726.563 kb on + strand, within Dshi_0718at 726.691 kb on - strand, within Dshi_0718at 726.766 kb on + strand, within Dshi_0718at 726.777 kb on - strand, within Dshi_0718at 726.815 kb on + strand, within Dshi_0718at 726.825 kb on - strand, within Dshi_0718at 726.844 kb on - strand, within Dshi_0718at 726.878 kb on + strand, within Dshi_0718

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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723,811 + Dshi_0716 0.42 -0.9
723,885 - Dshi_0716 0.47 -0.1
723,885 - Dshi_0716 0.47 -1.3
723,885 - Dshi_0716 0.47 +0.4
723,892 - Dshi_0716 0.48 -2.6
723,993 + Dshi_0716 0.55 -2.2
724,041 + Dshi_0716 0.58 +0.4
724,049 - Dshi_0716 0.59 -2.6
724,073 + Dshi_0716 0.61 -1.0
724,142 - Dshi_0716 0.66 +1.4
724,163 + Dshi_0716 0.67 -2.6
724,181 + Dshi_0716 0.69 -1.4
724,189 - Dshi_0716 0.69 -2.4
724,189 - Dshi_0716 0.69 -0.7
724,189 - Dshi_0716 0.69 -0.2
724,191 + Dshi_0716 0.69 -2.8
724,192 + Dshi_0716 0.69 +0.9
724,199 - Dshi_0716 0.70 -2.4
724,234 - Dshi_0716 0.72 +2.7
724,265 - Dshi_0716 0.75 -0.7
724,425 - Dshi_0716 0.86 -2.3
724,479 - Dshi_0716 0.90 -1.7
724,491 + +2.4
724,787 + -0.3
724,986 + -0.0
724,994 - Dshi_0717 0.26 -1.2
725,004 + Dshi_0717 0.26 -1.4
725,055 - Dshi_0717 0.31 -2.1
725,182 - Dshi_0717 0.41 +0.4
725,182 - Dshi_0717 0.41 +2.0
725,182 - Dshi_0717 0.41 +0.9
725,266 + Dshi_0717 0.48 -1.0
725,274 - Dshi_0717 0.48 +3.0
725,274 - Dshi_0717 0.48 +0.4
725,274 - Dshi_0717 0.48 -1.7
725,329 + Dshi_0717 0.53 -1.7
725,329 + Dshi_0717 0.53 -0.3
725,341 - Dshi_0717 0.54 +2.4
725,467 + Dshi_0717 0.64 -1.1
725,507 + Dshi_0717 0.67 -0.6
725,518 - Dshi_0717 0.68 -1.5
725,597 - Dshi_0717 0.75 -1.1
725,615 + Dshi_0717 0.76 +0.2
725,745 + Dshi_0717 0.87 -1.2
725,745 - Dshi_0717 0.87 -2.3
725,753 - Dshi_0717 0.87 -2.8
725,753 - Dshi_0717 0.87 -1.4
725,848 - -0.7
725,863 + -1.8
725,871 + +0.2
725,908 + +0.4
725,916 - -1.6
725,916 - +1.2
725,916 - -1.4
725,916 - -2.2
725,979 + -1.2
726,005 - +3.2
726,063 + -0.6
726,063 + -0.2
726,063 + +0.8
726,071 - +0.3
726,071 - +1.0
726,071 - -1.0
726,226 - -0.6
726,253 - +1.7
726,255 + +1.4
726,422 - Dshi_0718 0.11 -2.2
726,459 - Dshi_0718 0.13 -1.6
726,533 + Dshi_0718 0.18 +0.4
726,538 + Dshi_0718 0.18 -0.7
726,563 + Dshi_0718 0.20 +0.4
726,691 - Dshi_0718 0.28 +2.7
726,766 + Dshi_0718 0.33 -1.0
726,777 - Dshi_0718 0.34 +1.1
726,815 + Dshi_0718 0.36 +0.3
726,825 - Dshi_0718 0.37 -1.2
726,844 - Dshi_0718 0.38 +1.4
726,878 + Dshi_0718 0.41 +0.7

Or see this region's nucleotide sequence