Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0671

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0670 and Dshi_0671 are separated by 490 nucleotidesDshi_0671 and Dshi_0672 are separated by 30 nucleotidesDshi_0672 and Dshi_0673 overlap by 20 nucleotides Dshi_0670: Dshi_0670 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 675,215 to 675,919 _0670 Dshi_0671: Dshi_0671 - methyltransferase small (RefSeq), at 676,410 to 677,411 _0671 Dshi_0672: Dshi_0672 - short-chain dehydrogenase/reductase SDR (RefSeq), at 677,442 to 678,248 _0672 Dshi_0673: Dshi_0673 - hypothetical protein (RefSeq), at 678,229 to 678,606 _0673 Position (kb) 676 677 678Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 675.415 kb on + strand, within Dshi_0670at 675.438 kb on - strand, within Dshi_0670at 675.443 kb on + strand, within Dshi_0670at 675.635 kb on + strand, within Dshi_0670at 675.643 kb on - strand, within Dshi_0670at 675.655 kb on + strand, within Dshi_0670at 675.843 kb on - strand, within Dshi_0670at 675.899 kb on - strandat 675.935 kb on + strandat 675.950 kb on - strandat 676.079 kb on + strandat 676.082 kb on - strandat 676.104 kb on + strandat 676.118 kb on + strandat 676.126 kb on - strandat 676.161 kb on - strandat 676.232 kb on + strandat 676.263 kb on - strandat 676.286 kb on - strandat 676.318 kb on + strandat 676.406 kb on + strandat 676.406 kb on + strandat 676.457 kb on - strandat 676.468 kb on + strandat 676.484 kb on + strandat 676.645 kb on - strand, within Dshi_0671at 676.832 kb on + strand, within Dshi_0671at 676.869 kb on + strand, within Dshi_0671at 677.020 kb on + strand, within Dshi_0671at 677.176 kb on - strand, within Dshi_0671at 677.262 kb on - strand, within Dshi_0671at 677.272 kb on - strand, within Dshi_0671at 677.298 kb on + strand, within Dshi_0671at 677.313 kb on - strandat 677.333 kb on + strandat 677.341 kb on - strandat 677.425 kb on - strandat 678.391 kb on - strand, within Dshi_0673

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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675,415 + Dshi_0670 0.28 -0.3
675,438 - Dshi_0670 0.32 -1.0
675,443 + Dshi_0670 0.32 -2.8
675,635 + Dshi_0670 0.60 -1.3
675,643 - Dshi_0670 0.61 -1.3
675,655 + Dshi_0670 0.62 -0.1
675,843 - Dshi_0670 0.89 +2.9
675,899 - -0.5
675,935 + -0.3
675,950 - -2.4
676,079 + -3.5
676,082 - +0.3
676,104 + -0.7
676,118 + +2.3
676,126 - -1.7
676,161 - -0.9
676,232 + +0.7
676,263 - +0.3
676,286 - +0.9
676,318 + +0.3
676,406 + +0.3
676,406 + +0.9
676,457 - -2.4
676,468 + +0.3
676,484 + -0.7
676,645 - Dshi_0671 0.23 -3.4
676,832 + Dshi_0671 0.42 -1.7
676,869 + Dshi_0671 0.46 -0.7
677,020 + Dshi_0671 0.61 -2.3
677,176 - Dshi_0671 0.76 -0.7
677,262 - Dshi_0671 0.85 -1.5
677,272 - Dshi_0671 0.86 -3.0
677,298 + Dshi_0671 0.89 -2.0
677,313 - -1.3
677,333 + -1.0
677,341 - +0.3
677,425 - -0.1
678,391 - Dshi_0673 0.43 -0.3

Or see this region's nucleotide sequence