Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0516

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0514 and Dshi_0515 overlap by 4 nucleotidesDshi_0515 and Dshi_0516 are separated by 6 nucleotidesDshi_0516 and Dshi_0517 are separated by 272 nucleotides Dshi_0514: Dshi_0514 - response regulator receiver protein (RefSeq), at 498,765 to 498,947 _0514 Dshi_0515: Dshi_0515 - histidine kinase (RefSeq), at 498,944 to 499,843 _0515 Dshi_0516: Dshi_0516 - putative two-component sensor kinase (RefSeq), at 499,850 to 500,836 _0516 Dshi_0517: Dshi_0517 - periplasmic binding protein/LacI transcriptional regulator (RefSeq), at 501,109 to 502,149 _0517 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2 3at 498.908 kb on - strand, within Dshi_0514at 498.925 kb on + strand, within Dshi_0514at 499.074 kb on - strand, within Dshi_0515at 499.107 kb on + strand, within Dshi_0515at 499.115 kb on - strand, within Dshi_0515at 499.117 kb on + strand, within Dshi_0515at 499.174 kb on + strand, within Dshi_0515at 499.182 kb on - strand, within Dshi_0515at 499.244 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.293 kb on + strand, within Dshi_0515at 499.296 kb on - strand, within Dshi_0515at 499.359 kb on - strand, within Dshi_0515at 499.389 kb on + strand, within Dshi_0515at 499.397 kb on - strand, within Dshi_0515at 499.433 kb on + strand, within Dshi_0515at 499.459 kb on - strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.501 kb on + strand, within Dshi_0515at 499.570 kb on + strand, within Dshi_0515at 499.617 kb on - strand, within Dshi_0515at 499.643 kb on - strand, within Dshi_0515at 499.654 kb on - strand, within Dshi_0515at 499.664 kb on - strand, within Dshi_0515at 499.700 kb on + strand, within Dshi_0515at 499.768 kb on - strandat 499.781 kb on - strandat 499.795 kb on + strandat 499.852 kb on + strandat 499.884 kb on - strandat 500.008 kb on - strand, within Dshi_0516at 500.025 kb on + strand, within Dshi_0516at 500.033 kb on - strand, within Dshi_0516at 500.131 kb on + strand, within Dshi_0516at 500.181 kb on + strand, within Dshi_0516at 500.192 kb on + strand, within Dshi_0516at 500.313 kb on - strand, within Dshi_0516at 500.328 kb on - strand, within Dshi_0516at 500.382 kb on - strand, within Dshi_0516at 500.468 kb on + strand, within Dshi_0516at 500.473 kb on + strand, within Dshi_0516at 500.473 kb on + strand, within Dshi_0516at 500.476 kb on - strand, within Dshi_0516at 500.481 kb on - strand, within Dshi_0516at 500.533 kb on - strand, within Dshi_0516at 500.588 kb on - strand, within Dshi_0516at 500.604 kb on + strand, within Dshi_0516at 500.614 kb on + strand, within Dshi_0516at 500.622 kb on + strand, within Dshi_0516at 500.779 kb on + strandat 500.779 kb on + strandat 500.787 kb on - strandat 500.787 kb on - strandat 500.793 kb on + strandat 500.799 kb on + strandat 500.824 kb on - strandat 500.831 kb on + strandat 500.831 kb on + strandat 500.831 kb on + strandat 500.839 kb on - strandat 500.839 kb on - strandat 500.884 kb on + strandat 500.903 kb on - strandat 500.929 kb on - strandat 500.955 kb on - strandat 500.965 kb on - strandat 500.978 kb on - strandat 501.038 kb on + strandat 501.038 kb on + strandat 501.046 kb on - strandat 501.067 kb on + strandat 501.131 kb on + strandat 501.285 kb on + strand, within Dshi_0517at 501.353 kb on - strand, within Dshi_0517at 501.368 kb on - strand, within Dshi_0517at 501.426 kb on + strand, within Dshi_0517at 501.468 kb on + strand, within Dshi_0517at 501.505 kb on + strand, within Dshi_0517at 501.505 kb on + strand, within Dshi_0517at 501.513 kb on - strand, within Dshi_0517at 501.513 kb on - strand, within Dshi_0517at 501.518 kb on - strand, within Dshi_0517at 501.541 kb on - strand, within Dshi_0517at 501.661 kb on + strand, within Dshi_0517at 501.691 kb on + strand, within Dshi_0517at 501.748 kb on - strand, within Dshi_0517at 501.794 kb on - strand, within Dshi_0517at 501.799 kb on - strand, within Dshi_0517at 501.799 kb on - strand, within Dshi_0517at 501.800 kb on + strand, within Dshi_0517

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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498,908 - Dshi_0514 0.78 +1.2
498,925 + Dshi_0514 0.87 +0.5
499,074 - Dshi_0515 0.14 +0.4
499,107 + Dshi_0515 0.18 -0.9
499,115 - Dshi_0515 0.19 +0.5
499,117 + Dshi_0515 0.19 +0.8
499,174 + Dshi_0515 0.26 -0.4
499,182 - Dshi_0515 0.26 +0.9
499,244 + Dshi_0515 0.33 +0.3
499,293 + Dshi_0515 0.39 +0.5
499,293 + Dshi_0515 0.39 +0.1
499,296 - Dshi_0515 0.39 -0.4
499,359 - Dshi_0515 0.46 +1.2
499,389 + Dshi_0515 0.49 +0.1
499,397 - Dshi_0515 0.50 -2.2
499,433 + Dshi_0515 0.54 +0.2
499,459 - Dshi_0515 0.57 -0.8
499,501 + Dshi_0515 0.62 -0.5
499,501 + Dshi_0515 0.62 -2.1
499,570 + Dshi_0515 0.70 +0.2
499,617 - Dshi_0515 0.75 -0.4
499,643 - Dshi_0515 0.78 +0.1
499,654 - Dshi_0515 0.79 -0.4
499,664 - Dshi_0515 0.80 -0.9
499,700 + Dshi_0515 0.84 +0.1
499,768 - -0.7
499,781 - +0.1
499,795 + -0.0
499,852 + -0.3
499,884 - -0.5
500,008 - Dshi_0516 0.16 +3.4
500,025 + Dshi_0516 0.18 -1.9
500,033 - Dshi_0516 0.19 -1.0
500,131 + Dshi_0516 0.28 -0.4
500,181 + Dshi_0516 0.34 -0.8
500,192 + Dshi_0516 0.35 -0.1
500,313 - Dshi_0516 0.47 +0.8
500,328 - Dshi_0516 0.48 -0.5
500,382 - Dshi_0516 0.54 -0.0
500,468 + Dshi_0516 0.63 +0.6
500,473 + Dshi_0516 0.63 -0.2
500,473 + Dshi_0516 0.63 +1.1
500,476 - Dshi_0516 0.63 +0.2
500,481 - Dshi_0516 0.64 -2.7
500,533 - Dshi_0516 0.69 -0.1
500,588 - Dshi_0516 0.75 +0.8
500,604 + Dshi_0516 0.76 -0.3
500,614 + Dshi_0516 0.77 -0.7
500,622 + Dshi_0516 0.78 -0.7
500,779 + +1.6
500,779 + -0.6
500,787 - -0.7
500,787 - -1.0
500,793 + -2.1
500,799 + +0.9
500,824 - +0.1
500,831 + -0.4
500,831 + +1.5
500,831 + -0.6
500,839 - -0.1
500,839 - +0.0
500,884 + -1.7
500,903 - +0.5
500,929 - +0.3
500,955 - -0.2
500,965 - -0.2
500,978 - +1.1
501,038 + +0.6
501,038 + -0.6
501,046 - -0.5
501,067 + +0.7
501,131 + +0.4
501,285 + Dshi_0517 0.17 -0.5
501,353 - Dshi_0517 0.23 -0.4
501,368 - Dshi_0517 0.25 +0.1
501,426 + Dshi_0517 0.30 -0.4
501,468 + Dshi_0517 0.34 +0.2
501,505 + Dshi_0517 0.38 -0.1
501,505 + Dshi_0517 0.38 -0.7
501,513 - Dshi_0517 0.39 +1.1
501,513 - Dshi_0517 0.39 -0.3
501,518 - Dshi_0517 0.39 +0.1
501,541 - Dshi_0517 0.41 +0.0
501,661 + Dshi_0517 0.53 +0.3
501,691 + Dshi_0517 0.56 -0.4
501,748 - Dshi_0517 0.61 -0.2
501,794 - Dshi_0517 0.66 +1.3
501,799 - Dshi_0517 0.66 +0.7
501,799 - Dshi_0517 0.66 -0.3
501,800 + Dshi_0517 0.66 +0.8

Or see this region's nucleotide sequence