Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0491 and Dshi_0492 are separated by 58 nucleotides Dshi_0492 and Dshi_0493 overlap by 4 nucleotides Dshi_0493 and Dshi_0494 overlap by 4 nucleotides
Dshi_0491: Dshi_0491 - putative sulfonate/nitrate transport system substrate-binding protein (RefSeq), at 476,139 to 477,122
_0491
Dshi_0492: Dshi_0492 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 477,181 to 478,005
_0492
Dshi_0493: Dshi_0493 - ABC transporter related (RefSeq), at 478,002 to 478,751
_0493
Dshi_0494: Dshi_0494 - NnrS family protein (RefSeq), at 478,748 to 480,028
_0494
Position (kb) 478
479 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 477.003 kb on - strand, within Dshi_0491 at 477.072 kb on + strand at 477.086 kb on + strand at 477.091 kb on + strand at 477.139 kb on + strand at 477.147 kb on - strand at 477.172 kb on + strand at 477.182 kb on + strand at 477.224 kb on - strand at 477.241 kb on + strand at 477.251 kb on + strand at 477.255 kb on - strand at 477.341 kb on + strand, within Dshi_0492 at 477.363 kb on + strand, within Dshi_0492 at 477.372 kb on - strand, within Dshi_0492 at 477.425 kb on + strand, within Dshi_0492 at 477.469 kb on - strand, within Dshi_0492 at 477.507 kb on - strand at 477.522 kb on + strand, within Dshi_0492 at 477.525 kb on - strand, within Dshi_0492 at 477.569 kb on - strand, within Dshi_0492 at 477.596 kb on + strand, within Dshi_0492 at 477.618 kb on + strand, within Dshi_0492 at 477.645 kb on + strand, within Dshi_0492 at 477.669 kb on + strand, within Dshi_0492 at 477.722 kb on - strand, within Dshi_0492 at 477.766 kb on + strand, within Dshi_0492 at 477.785 kb on + strand, within Dshi_0492 at 477.888 kb on - strand, within Dshi_0492 at 477.888 kb on - strand, within Dshi_0492 at 477.900 kb on - strand, within Dshi_0492 at 477.907 kb on + strand, within Dshi_0492 at 477.910 kb on + strand, within Dshi_0492 at 477.936 kb on + strand at 477.944 kb on - strand at 477.979 kb on + strand at 477.979 kb on + strand at 477.979 kb on + strand at 477.987 kb on - strand at 477.987 kb on - strand at 478.016 kb on + strand at 478.019 kb on + strand at 478.045 kb on + strand at 478.046 kb on - strand at 478.103 kb on + strand, within Dshi_0493 at 478.111 kb on - strand, within Dshi_0493 at 478.163 kb on + strand, within Dshi_0493 at 478.171 kb on - strand, within Dshi_0493 at 478.171 kb on - strand, within Dshi_0493 at 478.240 kb on - strand, within Dshi_0493 at 478.283 kb on + strand, within Dshi_0493 at 478.376 kb on + strand, within Dshi_0493 at 478.538 kb on + strand, within Dshi_0493 at 478.538 kb on + strand, within Dshi_0493 at 478.546 kb on + strand, within Dshi_0493 at 478.546 kb on - strand, within Dshi_0493 at 478.554 kb on - strand, within Dshi_0493 at 478.554 kb on - strand, within Dshi_0493 at 478.652 kb on - strand, within Dshi_0493 at 478.668 kb on + strand, within Dshi_0493 at 478.676 kb on - strand, within Dshi_0493 at 478.679 kb on + strand at 478.679 kb on + strand at 478.726 kb on - strand at 478.726 kb on - strand at 478.755 kb on - strand at 478.859 kb on + strand at 479.059 kb on + strand, within Dshi_0494 at 479.059 kb on + strand, within Dshi_0494 at 479.067 kb on - strand, within Dshi_0494 at 479.079 kb on + strand, within Dshi_0494 at 479.244 kb on - strand, within Dshi_0494 at 479.244 kb on - strand, within Dshi_0494 at 479.326 kb on - strand, within Dshi_0494 at 479.337 kb on + strand, within Dshi_0494 at 479.414 kb on + strand, within Dshi_0494 at 479.468 kb on + strand, within Dshi_0494 at 479.492 kb on + strand, within Dshi_0494 at 479.500 kb on - strand, within Dshi_0494 at 479.500 kb on - strand, within Dshi_0494 at 479.526 kb on + strand, within Dshi_0494 at 479.624 kb on - strand, within Dshi_0494 at 479.651 kb on + strand, within Dshi_0494 at 479.668 kb on + strand, within Dshi_0494 at 479.714 kb on - strand, within Dshi_0494 at 479.723 kb on + strand, within Dshi_0494
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 477,003 - Dshi_0491 0.88 -0.7 477,072 + -0.6 477,086 + -0.6 477,091 + -1.5 477,139 + +0.1 477,147 - -0.7 477,172 + -2.7 477,182 + -3.3 477,224 - -1.1 477,241 + -2.5 477,251 + -2.4 477,255 - -0.1 477,341 + Dshi_0492 0.19 -2.3 477,363 + Dshi_0492 0.22 -2.3 477,372 - Dshi_0492 0.23 -0.5 477,425 + Dshi_0492 0.30 -3.3 477,469 - Dshi_0492 0.35 +0.1 477,507 - +2.4 477,522 + Dshi_0492 0.41 -0.9 477,525 - Dshi_0492 0.42 -0.3 477,569 - Dshi_0492 0.47 -0.7 477,596 + Dshi_0492 0.50 -0.8 477,618 + Dshi_0492 0.53 -0.6 477,645 + Dshi_0492 0.56 -2.7 477,669 + Dshi_0492 0.59 +1.3 477,722 - Dshi_0492 0.66 +1.1 477,766 + Dshi_0492 0.71 -0.4 477,785 + Dshi_0492 0.73 +0.1 477,888 - Dshi_0492 0.86 -1.5 477,888 - Dshi_0492 0.86 +3.2 477,900 - Dshi_0492 0.87 -0.4 477,907 + Dshi_0492 0.88 -2.1 477,910 + Dshi_0492 0.88 -1.2 477,936 + +0.4 477,944 - -1.5 477,979 + +2.6 477,979 + -2.3 477,979 + -0.9 477,987 - -1.3 477,987 - -1.0 478,016 + -0.5 478,019 + -0.1 478,045 + -1.3 478,046 - +0.4 478,103 + Dshi_0493 0.13 +1.6 478,111 - Dshi_0493 0.15 -2.9 478,163 + Dshi_0493 0.21 -1.8 478,171 - Dshi_0493 0.23 -1.9 478,171 - Dshi_0493 0.23 -2.5 478,240 - Dshi_0493 0.32 -1.1 478,283 + Dshi_0493 0.37 +1.6 478,376 + Dshi_0493 0.50 -1.6 478,538 + Dshi_0493 0.71 -0.1 478,538 + Dshi_0493 0.71 -1.8 478,546 + Dshi_0493 0.73 -2.7 478,546 - Dshi_0493 0.73 -3.3 478,554 - Dshi_0493 0.74 -1.5 478,554 - Dshi_0493 0.74 -3.8 478,652 - Dshi_0493 0.87 -1.5 478,668 + Dshi_0493 0.89 +0.6 478,676 - Dshi_0493 0.90 -2.6 478,679 + -1.0 478,679 + +0.1 478,726 - +1.1 478,726 - +0.6 478,755 - -2.2 478,859 + -0.4 479,059 + Dshi_0494 0.24 -0.5 479,059 + Dshi_0494 0.24 -2.2 479,067 - Dshi_0494 0.25 -0.9 479,079 + Dshi_0494 0.26 -0.4 479,244 - Dshi_0494 0.39 -2.7 479,244 - Dshi_0494 0.39 +1.6 479,326 - Dshi_0494 0.45 -1.0 479,337 + Dshi_0494 0.46 +0.9 479,414 + Dshi_0494 0.52 +1.6 479,468 + Dshi_0494 0.56 -1.2 479,492 + Dshi_0494 0.58 -1.5 479,500 - Dshi_0494 0.59 -0.9 479,500 - Dshi_0494 0.59 -2.1 479,526 + Dshi_0494 0.61 -2.6 479,624 - Dshi_0494 0.68 +0.5 479,651 + Dshi_0494 0.70 +0.1 479,668 + Dshi_0494 0.72 -0.9 479,714 - Dshi_0494 0.75 -0.8 479,723 + Dshi_0494 0.76 -1.7
Or see this region's nucleotide sequence