Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0261

Experiment: m.b. Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0259 and Dshi_0260 are separated by 103 nucleotidesDshi_0260 and Dshi_0261 are separated by 1 nucleotidesDshi_0261 and Dshi_0262 are separated by 352 nucleotides Dshi_0259: Dshi_0259 - NusG antitermination factor (RefSeq), at 256,673 to 257,206 _0259 Dshi_0260: Dshi_0260 - ribosomal protein L11 (RefSeq), at 257,310 to 257,735 _0260 Dshi_0261: Dshi_0261 - ribosomal protein L1 (RefSeq), at 257,737 to 258,435 _0261 Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516 _0262 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 258.573 kb on + strandat 258.578 kb on + strandat 258.581 kb on - strandat 258.584 kb on - strandat 258.592 kb on - strandat 258.605 kb on + strandat 258.658 kb on - strandat 258.663 kb on + strandat 258.715 kb on - strandat 258.811 kb on + strandat 258.822 kb on + strandat 258.827 kb on + strandat 258.827 kb on + strandat 258.828 kb on + strandat 258.835 kb on - strandat 258.869 kb on + strand, within Dshi_0262at 259.039 kb on + strand, within Dshi_0262at 259.173 kb on + strand, within Dshi_0262at 259.217 kb on + strand, within Dshi_0262at 259.276 kb on + strand, within Dshi_0262at 259.318 kb on - strand, within Dshi_0262

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
remove
258,573 + -1.4
258,578 + -0.9
258,581 - -0.0
258,584 - +1.4
258,592 - -1.2
258,605 + -0.5
258,658 - -3.2
258,663 + +1.7
258,715 - -0.9
258,811 + -0.2
258,822 + -1.0
258,827 + +0.8
258,827 + -1.6
258,828 + -2.8
258,835 - +0.4
258,869 + Dshi_0262 0.11 -1.2
259,039 + Dshi_0262 0.34 +0.4
259,173 + Dshi_0262 0.53 -0.4
259,217 + Dshi_0262 0.59 +2.1
259,276 + Dshi_0262 0.67 -0.6
259,318 - Dshi_0262 0.73 -0.8

Or see this region's nucleotide sequence