Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0236

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0235 and Dshi_0236 are separated by 173 nucleotidesDshi_0236 and Dshi_0237 are separated by 360 nucleotides Dshi_0235: Dshi_0235 - phenylalanyl-tRNA synthetase, alpha subunit (RefSeq), at 232,709 to 233,782 _0235 Dshi_0236: Dshi_0236 - hypothetical protein (RefSeq), at 233,956 to 234,210 _0236 Dshi_0237: Dshi_0237 - phenylalanyl-tRNA synthetase, beta subunit (RefSeq), at 234,571 to 236,967 _0237 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1at 233.809 kb on - strandat 234.047 kb on - strand, within Dshi_0236at 234.053 kb on + strand, within Dshi_0236at 234.063 kb on + strand, within Dshi_0236at 234.211 kb on + strandat 234.296 kb on - strandat 234.329 kb on - strandat 234.466 kb on + strandat 234.474 kb on - strandat 234.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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233,809 - -2.2
234,047 - Dshi_0236 0.36 +0.4
234,053 + Dshi_0236 0.38 -1.9
234,063 + Dshi_0236 0.42 -1.2
234,211 + -1.6
234,296 - -0.9
234,329 - +0.2
234,466 + -1.0
234,474 - -0.6
234,504 + +0.4

Or see this region's nucleotide sequence