Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0167

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0165 and Dshi_0166 overlap by 4 nucleotidesDshi_0166 and Dshi_0167 overlap by 4 nucleotidesDshi_0167 and Dshi_0168 are separated by 278 nucleotidesDshi_0168 and Dshi_0169 are separated by 101 nucleotides Dshi_0165: Dshi_0165 - cobalamin biosynthesis protein CobD (RefSeq), at 169,365 to 170,276 _0165 Dshi_0166: Dshi_0166 - aminotransferase class I and II (RefSeq), at 170,273 to 171,229 _0166 Dshi_0167: Dshi_0167 - protein of unknown function DUF1636 (RefSeq), at 171,226 to 171,609 _0167 Dshi_0168: Dshi_0168 - response regulator receiver protein (RefSeq), at 171,888 to 172,247 _0168 Dshi_0169: Dshi_0169 - putative glutathione S-transferase (RefSeq), at 172,349 to 173,338 _0169 Position (kb) 171 172Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 171.406 kb on - strand, within Dshi_0167at 171.446 kb on + strand, within Dshi_0167at 171.506 kb on + strand, within Dshi_0167at 171.618 kb on + strandat 171.618 kb on + strandat 171.625 kb on + strandat 171.625 kb on + strandat 171.628 kb on - strandat 171.641 kb on - strandat 171.651 kb on - strandat 171.656 kb on - strandat 171.666 kb on + strandat 171.671 kb on + strandat 171.680 kb on + strandat 171.709 kb on + strandat 171.717 kb on - strandat 171.717 kb on - strandat 171.717 kb on - strandat 171.800 kb on - strandat 171.820 kb on + strandat 171.823 kb on - strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.825 kb on + strandat 171.826 kb on + strandat 171.828 kb on + strandat 171.828 kb on + strandat 171.828 kb on + strandat 171.830 kb on + strandat 171.830 kb on + strandat 171.830 kb on + strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.833 kb on - strandat 171.836 kb on - strandat 171.838 kb on - strandat 171.839 kb on - strandat 171.844 kb on - strandat 171.849 kb on - strandat 171.859 kb on - strandat 171.901 kb on - strandat 171.924 kb on + strand, within Dshi_0168at 171.924 kb on + strand, within Dshi_0168at 171.944 kb on + strand, within Dshi_0168at 171.944 kb on + strand, within Dshi_0168at 171.955 kb on + strand, within Dshi_0168at 172.004 kb on + strand, within Dshi_0168at 172.012 kb on - strand, within Dshi_0168at 172.012 kb on - strand, within Dshi_0168at 172.012 kb on - strand, within Dshi_0168at 172.022 kb on - strand, within Dshi_0168at 172.047 kb on - strand, within Dshi_0168at 172.047 kb on - strand, within Dshi_0168at 172.058 kb on - strand, within Dshi_0168at 172.060 kb on + strand, within Dshi_0168at 172.164 kb on - strand, within Dshi_0168at 172.173 kb on - strand, within Dshi_0168at 172.186 kb on + strand, within Dshi_0168at 172.190 kb on + strand, within Dshi_0168at 172.209 kb on + strand, within Dshi_0168at 172.217 kb on - strandat 172.223 kb on + strandat 172.229 kb on + strandat 172.241 kb on + strandat 172.241 kb on + strandat 172.241 kb on + strandat 172.271 kb on + strandat 172.271 kb on + strandat 172.271 kb on + strandat 172.271 kb on + strandat 172.271 kb on + strandat 172.271 kb on + strandat 172.279 kb on - strandat 172.279 kb on - strandat 172.279 kb on - strandat 172.284 kb on - strandat 172.296 kb on - strandat 172.349 kb on - strandat 172.349 kb on - strandat 172.381 kb on + strandat 172.381 kb on + strandat 172.381 kb on + strandat 172.381 kb on - strandat 172.434 kb on - strandat 172.435 kb on + strandat 172.445 kb on + strandat 172.476 kb on - strand, within Dshi_0169at 172.500 kb on + strand, within Dshi_0169at 172.510 kb on + strand, within Dshi_0169at 172.518 kb on - strand, within Dshi_0169at 172.518 kb on - strand, within Dshi_0169at 172.523 kb on + strand, within Dshi_0169at 172.524 kb on + strand, within Dshi_0169at 172.524 kb on + strand, within Dshi_0169at 172.524 kb on + strand, within Dshi_0169at 172.525 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.531 kb on + strand, within Dshi_0169at 172.532 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.539 kb on - strand, within Dshi_0169at 172.563 kb on + strand, within Dshi_0169at 172.586 kb on - strand, within Dshi_0169

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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171,406 - Dshi_0167 0.47 -2.0
171,446 + Dshi_0167 0.57 -1.1
171,506 + Dshi_0167 0.73 -0.9
171,618 + -1.9
171,618 + +0.4
171,625 + -0.8
171,625 + -0.9
171,628 - -0.9
171,641 - -0.1
171,651 - -1.1
171,656 - +3.0
171,666 + -1.0
171,671 + -0.8
171,680 + -0.1
171,709 + -0.9
171,717 - -1.1
171,717 - -0.8
171,717 - +4.1
171,800 - -1.3
171,820 + +2.2
171,823 - +2.4
171,825 + +0.5
171,825 + +0.3
171,825 + -0.7
171,825 + -2.4
171,825 + +0.9
171,825 + -0.7
171,825 + -1.0
171,825 + +1.0
171,825 + -0.4
171,825 + +0.9
171,825 + +1.3
171,825 + -1.4
171,825 + +0.1
171,825 + +0.4
171,825 + -1.3
171,825 + -0.6
171,825 + +0.4
171,825 + -1.1
171,825 + -0.6
171,825 + -0.6
171,825 + +0.9
171,825 + +0.0
171,825 + -2.1
171,825 + -0.1
171,825 + -4.0
171,826 + -3.9
171,828 + -2.7
171,828 + -1.3
171,828 + +1.4
171,830 + +1.7
171,830 + -0.3
171,830 + -2.7
171,833 - -1.3
171,833 - +3.3
171,833 - -0.6
171,833 - -0.8
171,833 - -0.3
171,833 - -1.9
171,833 - +0.4
171,833 - -2.6
171,833 - +1.4
171,833 - -0.1
171,833 - -0.5
171,833 - -2.6
171,833 - -1.4
171,833 - -2.0
171,833 - -3.7
171,833 - -3.3
171,833 - -0.6
171,833 - -0.6
171,833 - -0.6
171,833 - +0.4
171,833 - +3.4
171,833 - +1.3
171,836 - -3.3
171,838 - -0.2
171,839 - +2.0
171,844 - -0.9
171,849 - +0.4
171,859 - -1.9
171,901 - -3.6
171,924 + Dshi_0168 0.10 +0.3
171,924 + Dshi_0168 0.10 -0.5
171,944 + Dshi_0168 0.16 +1.4
171,944 + Dshi_0168 0.16 -0.4
171,955 + Dshi_0168 0.19 +0.0
172,004 + Dshi_0168 0.32 -0.7
172,012 - Dshi_0168 0.34 -2.7
172,012 - Dshi_0168 0.34 +2.0
172,012 - Dshi_0168 0.34 +1.0
172,022 - Dshi_0168 0.37 -2.0
172,047 - Dshi_0168 0.44 -2.3
172,047 - Dshi_0168 0.44 -0.2
172,058 - Dshi_0168 0.47 +0.4
172,060 + Dshi_0168 0.48 -1.4
172,164 - Dshi_0168 0.77 -2.1
172,173 - Dshi_0168 0.79 -2.1
172,186 + Dshi_0168 0.83 +0.1
172,190 + Dshi_0168 0.84 -0.7
172,209 + Dshi_0168 0.89 +0.2
172,217 - -0.7
172,223 + -2.1
172,229 + +1.4
172,241 + -1.4
172,241 + -0.8
172,241 + -1.4
172,271 + -1.1
172,271 + +1.3
172,271 + -1.4
172,271 + -1.2
172,271 + -2.9
172,271 + +2.2
172,279 - -1.4
172,279 - -1.5
172,279 - +0.4
172,284 - +0.0
172,296 - +0.2
172,349 - -0.0
172,349 - +2.8
172,381 + -0.1
172,381 + -2.7
172,381 + -1.7
172,381 - -1.6
172,434 - -1.1
172,435 + -1.7
172,445 + -0.0
172,476 - Dshi_0169 0.13 +0.8
172,500 + Dshi_0169 0.15 -2.5
172,510 + Dshi_0169 0.16 -1.5
172,518 - Dshi_0169 0.17 +0.3
172,518 - Dshi_0169 0.17 -2.1
172,523 + Dshi_0169 0.18 -0.0
172,524 + Dshi_0169 0.18 -1.0
172,524 + Dshi_0169 0.18 -0.6
172,524 + Dshi_0169 0.18 +0.4
172,525 + Dshi_0169 0.18 -2.6
172,531 + Dshi_0169 0.18 -2.6
172,531 + Dshi_0169 0.18 +1.8
172,531 + Dshi_0169 0.18 -1.1
172,531 + Dshi_0169 0.18 +2.0
172,531 + Dshi_0169 0.18 -1.6
172,531 + Dshi_0169 0.18 +1.4
172,531 + Dshi_0169 0.18 -2.1
172,531 + Dshi_0169 0.18 +2.8
172,532 - Dshi_0169 0.18 -0.6
172,539 - Dshi_0169 0.19 -2.5
172,539 - Dshi_0169 0.19 +0.1
172,539 - Dshi_0169 0.19 +3.4
172,539 - Dshi_0169 0.19 +0.7
172,539 - Dshi_0169 0.19 +0.1
172,539 - Dshi_0169 0.19 -0.9
172,563 + Dshi_0169 0.22 +0.7
172,586 - Dshi_0169 0.24 -1.1

Or see this region's nucleotide sequence