Strain Fitness in Shewanella oneidensis MR-1 around SO0311

Experiment: copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0308 and SO0309 are separated by 155 nucleotidesSO0309 and SO0311 are separated by 213 nucleotidesSO0311 and SO0312 are separated by 207 nucleotides SO0308: SO0308 - conserved hypothetical protein (NCBI ptt file), at 312,988 to 314,208 SO0308 SO0309: SO0309 - conserved hypothetical protein (NCBI ptt file), at 314,364 to 314,762 SO0309 SO0311: SO0311 - hypothetical Fe-S oxidoreductase (NCBI ptt file), at 314,976 to 317,336 SO0311 SO0312: SO0312 - outer membrane porin, putative (NCBI ptt file), at 317,544 to 318,698 SO0312 Position (kb) 314 315 316 317 318Strain fitness (log2 ratio) -1 0 1at 313.996 kb on - strand, within SO0308at 314.052 kb on + strand, within SO0308at 314.090 kb on + strandat 314.488 kb on + strand, within SO0309at 314.644 kb on + strand, within SO0309at 314.691 kb on + strand, within SO0309at 314.699 kb on - strand, within SO0309at 314.742 kb on - strandat 314.742 kb on - strandat 314.763 kb on + strandat 314.777 kb on - strandat 314.777 kb on - strandat 314.815 kb on - strandat 314.892 kb on + strandat 314.902 kb on - strandat 314.902 kb on - strandat 315.011 kb on + strandat 315.026 kb on + strandat 315.097 kb on + strandat 315.119 kb on - strandat 315.170 kb on + strandat 315.179 kb on - strandat 315.234 kb on + strand, within SO0311at 315.296 kb on + strand, within SO0311at 315.304 kb on - strand, within SO0311at 315.585 kb on - strand, within SO0311at 315.607 kb on + strand, within SO0311at 315.613 kb on - strand, within SO0311at 315.615 kb on - strand, within SO0311at 315.622 kb on + strand, within SO0311at 315.622 kb on + strand, within SO0311at 315.627 kb on + strand, within SO0311at 315.630 kb on - strand, within SO0311at 315.630 kb on - strand, within SO0311at 315.659 kb on - strand, within SO0311at 315.664 kb on + strand, within SO0311at 315.813 kb on - strand, within SO0311at 315.849 kb on - strand, within SO0311at 315.937 kb on - strand, within SO0311at 315.937 kb on - strand, within SO0311at 315.956 kb on + strand, within SO0311at 315.956 kb on + strand, within SO0311at 316.001 kb on + strand, within SO0311at 316.124 kb on + strand, within SO0311at 316.179 kb on + strand, within SO0311at 316.179 kb on + strand, within SO0311at 316.187 kb on - strand, within SO0311at 316.251 kb on - strand, within SO0311at 316.411 kb on - strand, within SO0311at 316.514 kb on - strand, within SO0311at 316.514 kb on - strand, within SO0311at 316.653 kb on - strand, within SO0311at 316.726 kb on + strand, within SO0311at 316.726 kb on + strand, within SO0311at 316.734 kb on - strand, within SO0311at 316.734 kb on - strand, within SO0311at 316.742 kb on + strand, within SO0311at 316.750 kb on - strand, within SO0311at 316.766 kb on + strand, within SO0311at 316.808 kb on - strand, within SO0311at 316.820 kb on - strand, within SO0311at 316.839 kb on - strand, within SO0311at 316.843 kb on + strand, within SO0311at 316.952 kb on - strand, within SO0311at 316.953 kb on + strand, within SO0311at 317.075 kb on + strand, within SO0311at 317.106 kb on + strandat 317.189 kb on + strandat 317.189 kb on + strandat 317.189 kb on + strandat 317.197 kb on - strandat 317.243 kb on + strandat 317.243 kb on + strandat 317.253 kb on + strandat 317.256 kb on - strandat 317.258 kb on + strandat 317.261 kb on - strandat 317.266 kb on - strandat 317.281 kb on - strandat 317.286 kb on + strandat 317.294 kb on - strandat 317.309 kb on - strandat 317.335 kb on - strandat 317.390 kb on + strandat 317.490 kb on + strandat 317.498 kb on - strandat 317.498 kb on - strandat 317.574 kb on + strandat 317.574 kb on + strandat 317.652 kb on + strandat 317.683 kb on - strand, within SO0312at 317.743 kb on + strand, within SO0312at 317.746 kb on - strand, within SO0312at 317.753 kb on + strand, within SO0312at 317.801 kb on + strand, within SO0312at 317.809 kb on - strand, within SO0312at 317.830 kb on + strand, within SO0312at 317.973 kb on - strand, within SO0312at 317.974 kb on - strand, within SO0312at 317.976 kb on + strand, within SO0312at 318.002 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.048 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.104 kb on + strand, within SO0312at 318.159 kb on + strand, within SO0312at 318.167 kb on - strand, within SO0312at 318.167 kb on - strand, within SO0312at 318.209 kb on + strand, within SO0312at 318.214 kb on + strand, within SO0312at 318.233 kb on + strand, within SO0312at 318.240 kb on + strand, within SO0312at 318.254 kb on + strand, within SO0312at 318.289 kb on + strand, within SO0312at 318.289 kb on - strand, within SO0312

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.32 mM
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313,996 - SO0308 0.83 -0.3
314,052 + SO0308 0.87 +0.1
314,090 + +0.5
314,488 + SO0309 0.31 +0.9
314,644 + SO0309 0.70 +0.5
314,691 + SO0309 0.82 -0.7
314,699 - SO0309 0.84 +0.2
314,742 - -0.2
314,742 - -0.0
314,763 + -0.3
314,777 - -0.4
314,777 - +0.5
314,815 - +1.1
314,892 + +0.1
314,902 - -0.3
314,902 - +1.2
315,011 + +0.3
315,026 + +0.5
315,097 + +0.7
315,119 - +0.2
315,170 + +0.2
315,179 - +0.1
315,234 + SO0311 0.11 -0.5
315,296 + SO0311 0.14 +0.0
315,304 - SO0311 0.14 +0.2
315,585 - SO0311 0.26 -0.2
315,607 + SO0311 0.27 +0.2
315,613 - SO0311 0.27 -0.7
315,615 - SO0311 0.27 +0.3
315,622 + SO0311 0.27 +0.2
315,622 + SO0311 0.27 -1.2
315,627 + SO0311 0.28 -0.3
315,630 - SO0311 0.28 -0.2
315,630 - SO0311 0.28 -0.8
315,659 - SO0311 0.29 -0.1
315,664 + SO0311 0.29 -0.4
315,813 - SO0311 0.35 +0.1
315,849 - SO0311 0.37 +0.3
315,937 - SO0311 0.41 -0.2
315,937 - SO0311 0.41 -0.3
315,956 + SO0311 0.42 +0.1
315,956 + SO0311 0.42 +0.4
316,001 + SO0311 0.43 -0.3
316,124 + SO0311 0.49 +0.9
316,179 + SO0311 0.51 -0.3
316,179 + SO0311 0.51 -0.2
316,187 - SO0311 0.51 -0.1
316,251 - SO0311 0.54 -0.4
316,411 - SO0311 0.61 +0.1
316,514 - SO0311 0.65 +0.0
316,514 - SO0311 0.65 -0.2
316,653 - SO0311 0.71 +0.2
316,726 + SO0311 0.74 +0.4
316,726 + SO0311 0.74 -0.3
316,734 - SO0311 0.74 +0.2
316,734 - SO0311 0.74 +0.2
316,742 + SO0311 0.75 +0.0
316,750 - SO0311 0.75 -0.1
316,766 + SO0311 0.76 +0.3
316,808 - SO0311 0.78 +0.5
316,820 - SO0311 0.78 -0.4
316,839 - SO0311 0.79 -0.7
316,843 + SO0311 0.79 +0.5
316,952 - SO0311 0.84 +0.6
316,953 + SO0311 0.84 -0.0
317,075 + SO0311 0.89 +0.1
317,106 + +0.6
317,189 + +0.3
317,189 + +0.3
317,189 + +0.3
317,197 - -1.4
317,243 + +0.5
317,243 + -0.0
317,253 + -0.5
317,256 - +1.0
317,258 + +0.3
317,261 - +0.1
317,266 - -0.6
317,281 - +1.0
317,286 + -0.2
317,294 - +0.0
317,309 - +1.0
317,335 - +0.0
317,390 + +0.5
317,490 + +0.1
317,498 - +0.5
317,498 - -0.5
317,574 + -0.9
317,574 + -0.4
317,652 + -0.3
317,683 - SO0312 0.12 +0.1
317,743 + SO0312 0.17 +0.2
317,746 - SO0312 0.17 +0.5
317,753 + SO0312 0.18 -0.3
317,801 + SO0312 0.22 -0.3
317,809 - SO0312 0.23 -0.9
317,830 + SO0312 0.25 -0.1
317,973 - SO0312 0.37 -0.6
317,974 - SO0312 0.37 +0.2
317,976 + SO0312 0.37 +0.1
318,002 + SO0312 0.40 -0.0
318,045 + SO0312 0.43 +0.1
318,045 + SO0312 0.43 +0.1
318,045 + SO0312 0.43 +0.2
318,045 + SO0312 0.43 -0.0
318,045 + SO0312 0.43 -0.4
318,045 + SO0312 0.43 -0.3
318,045 + SO0312 0.43 +0.2
318,045 + SO0312 0.43 +0.4
318,045 + SO0312 0.43 +0.1
318,045 + SO0312 0.43 -0.1
318,045 + SO0312 0.43 -1.3
318,048 - SO0312 0.44 -0.8
318,053 - SO0312 0.44 +0.5
318,053 - SO0312 0.44 +0.1
318,053 - SO0312 0.44 +0.1
318,053 - SO0312 0.44 +0.4
318,053 - SO0312 0.44 -0.1
318,053 - SO0312 0.44 +0.6
318,104 + SO0312 0.48 +0.3
318,159 + SO0312 0.53 +0.3
318,167 - SO0312 0.54 -0.3
318,167 - SO0312 0.54 -0.2
318,209 + SO0312 0.58 +0.5
318,214 + SO0312 0.58 -0.4
318,233 + SO0312 0.60 +0.3
318,240 + SO0312 0.60 -0.1
318,254 + SO0312 0.61 -0.3
318,289 + SO0312 0.65 +0.3
318,289 - SO0312 0.65 +0.0

Or see this region's nucleotide sequence