Strain Fitness in Shewanella oneidensis MR-1 around SO0151

Experiment: copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0150 and SO0151 are separated by 271 nucleotidesSO0151 and SO0152 are separated by 25 nucleotides SO0150: SO0150 - lipoprotein, putative (NCBI ptt file), at 158,400 to 159,176 SO0150 SO0151: SO0151 - hypothetical SAM-dependent methyltransferase (NCBI ptt file), at 159,448 to 160,215 SO0151 SO0152: SO0152 - hypothetical carboxypeptidase (NCBI ptt file), at 160,241 to 162,124 SO0152 Position (kb) 159 160 161Strain fitness (log2 ratio) -1 0 1at 158.453 kb on - strandat 158.453 kb on - strandat 158.467 kb on + strandat 158.479 kb on + strand, within SO0150at 158.481 kb on - strand, within SO0150at 158.534 kb on - strand, within SO0150at 158.606 kb on + strand, within SO0150at 158.631 kb on - strand, within SO0150at 158.657 kb on - strand, within SO0150at 158.672 kb on + strand, within SO0150at 158.684 kb on + strand, within SO0150at 158.730 kb on - strand, within SO0150at 158.762 kb on - strand, within SO0150at 158.789 kb on + strand, within SO0150at 158.797 kb on - strand, within SO0150at 158.961 kb on + strand, within SO0150at 159.026 kb on + strand, within SO0150at 159.026 kb on - strand, within SO0150at 159.125 kb on + strandat 159.163 kb on - strandat 159.382 kb on + strandat 159.405 kb on + strandat 159.408 kb on - strandat 159.428 kb on - strandat 159.499 kb on + strandat 159.531 kb on - strand, within SO0151at 159.726 kb on + strand, within SO0151at 159.811 kb on + strand, within SO0151at 159.830 kb on + strand, within SO0151at 159.863 kb on + strand, within SO0151at 159.880 kb on + strand, within SO0151at 159.882 kb on + strand, within SO0151at 159.890 kb on - strand, within SO0151at 159.890 kb on - strand, within SO0151at 159.972 kb on + strand, within SO0151at 160.014 kb on - strand, within SO0151at 160.015 kb on - strand, within SO0151at 160.015 kb on - strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.071 kb on - strand, within SO0151at 160.071 kb on - strand, within SO0151at 160.110 kb on - strand, within SO0151at 160.129 kb on - strand, within SO0151at 160.129 kb on - strand, within SO0151at 160.173 kb on + strandat 160.198 kb on - strandat 160.200 kb on + strandat 160.200 kb on + strandat 160.208 kb on - strandat 160.247 kb on - strandat 160.259 kb on - strandat 160.290 kb on + strandat 160.298 kb on - strandat 160.300 kb on + strandat 160.308 kb on - strandat 160.308 kb on - strandat 160.340 kb on - strandat 160.349 kb on + strandat 160.386 kb on - strandat 160.427 kb on + strandat 160.435 kb on - strand, within SO0152at 160.448 kb on + strand, within SO0152at 160.456 kb on - strand, within SO0152at 160.456 kb on - strand, within SO0152at 160.467 kb on - strand, within SO0152at 160.526 kb on + strand, within SO0152at 160.527 kb on + strand, within SO0152at 160.534 kb on - strand, within SO0152at 160.542 kb on + strand, within SO0152at 160.550 kb on - strand, within SO0152at 160.573 kb on - strand, within SO0152at 160.601 kb on + strand, within SO0152at 160.643 kb on - strand, within SO0152at 160.643 kb on - strand, within SO0152at 160.657 kb on + strand, within SO0152at 160.665 kb on - strand, within SO0152at 160.691 kb on + strand, within SO0152at 160.691 kb on + strand, within SO0152at 160.783 kb on + strand, within SO0152at 160.824 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.882 kb on + strand, within SO0152at 160.911 kb on + strand, within SO0152at 160.917 kb on + strand, within SO0152at 160.925 kb on - strand, within SO0152at 160.970 kb on + strand, within SO0152at 161.042 kb on - strand, within SO0152at 161.044 kb on + strand, within SO0152at 161.077 kb on + strand, within SO0152at 161.077 kb on + strand, within SO0152at 161.085 kb on - strand, within SO0152at 161.142 kb on - strand, within SO0152at 161.166 kb on + strand, within SO0152at 161.166 kb on + strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.177 kb on + strand, within SO0152

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.32 mM
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158,453 - -0.4
158,453 - -0.3
158,467 + +0.2
158,479 + SO0150 0.10 +0.4
158,481 - SO0150 0.10 +0.3
158,534 - SO0150 0.17 +1.1
158,606 + SO0150 0.27 -0.2
158,631 - SO0150 0.30 -0.1
158,657 - SO0150 0.33 +0.2
158,672 + SO0150 0.35 +0.1
158,684 + SO0150 0.37 -0.1
158,730 - SO0150 0.42 +0.6
158,762 - SO0150 0.47 -0.6
158,789 + SO0150 0.50 +0.2
158,797 - SO0150 0.51 +0.2
158,961 + SO0150 0.72 +0.2
159,026 + SO0150 0.81 +0.4
159,026 - SO0150 0.81 +0.9
159,125 + +0.2
159,163 - -0.2
159,382 + -0.3
159,405 + +0.4
159,408 - -0.7
159,428 - -0.5
159,499 + -1.0
159,531 - SO0151 0.11 +0.6
159,726 + SO0151 0.36 -0.0
159,811 + SO0151 0.47 -0.2
159,830 + SO0151 0.50 +0.8
159,863 + SO0151 0.54 -0.2
159,880 + SO0151 0.56 +0.5
159,882 + SO0151 0.57 +0.7
159,890 - SO0151 0.58 -0.1
159,890 - SO0151 0.58 +0.5
159,972 + SO0151 0.68 +0.6
160,014 - SO0151 0.74 -1.4
160,015 - SO0151 0.74 -0.2
160,015 - SO0151 0.74 +0.1
160,063 + SO0151 0.80 -0.5
160,063 + SO0151 0.80 +0.1
160,063 + SO0151 0.80 -0.5
160,063 + SO0151 0.80 -1.0
160,063 + SO0151 0.80 +0.3
160,071 - SO0151 0.81 -0.2
160,071 - SO0151 0.81 -0.8
160,110 - SO0151 0.86 -0.1
160,129 - SO0151 0.89 -0.4
160,129 - SO0151 0.89 -0.5
160,173 + +0.3
160,198 - +0.5
160,200 + +0.4
160,200 + -0.0
160,208 - +0.8
160,247 - -0.2
160,259 - +0.1
160,290 + -0.1
160,298 - -0.9
160,300 + -0.2
160,308 - -0.7
160,308 - +0.6
160,340 - +0.4
160,349 + +0.5
160,386 - +0.5
160,427 + +0.2
160,435 - SO0152 0.10 +0.9
160,448 + SO0152 0.11 -0.5
160,456 - SO0152 0.11 +0.4
160,456 - SO0152 0.11 -0.3
160,467 - SO0152 0.12 -0.2
160,526 + SO0152 0.15 -0.2
160,527 + SO0152 0.15 +0.2
160,534 - SO0152 0.16 +0.2
160,542 + SO0152 0.16 +0.2
160,550 - SO0152 0.16 +0.0
160,573 - SO0152 0.18 +0.3
160,601 + SO0152 0.19 -0.4
160,643 - SO0152 0.21 +0.3
160,643 - SO0152 0.21 +0.5
160,657 + SO0152 0.22 +0.2
160,665 - SO0152 0.23 -0.0
160,691 + SO0152 0.24 +0.2
160,691 + SO0152 0.24 -0.3
160,783 + SO0152 0.29 -0.6
160,824 + SO0152 0.31 -0.3
160,831 + SO0152 0.31 +0.7
160,831 + SO0152 0.31 +0.8
160,831 + SO0152 0.31 +0.4
160,831 + SO0152 0.31 -0.7
160,839 - SO0152 0.32 +0.0
160,839 - SO0152 0.32 +0.7
160,839 - SO0152 0.32 +0.3
160,882 + SO0152 0.34 +0.3
160,911 + SO0152 0.36 +0.3
160,917 + SO0152 0.36 -0.4
160,925 - SO0152 0.36 +0.5
160,970 + SO0152 0.39 +0.5
161,042 - SO0152 0.43 -0.7
161,044 + SO0152 0.43 +0.6
161,077 + SO0152 0.44 -0.2
161,077 + SO0152 0.44 +0.2
161,085 - SO0152 0.45 +0.1
161,142 - SO0152 0.48 +0.9
161,166 + SO0152 0.49 -0.6
161,166 + SO0152 0.49 -1.0
161,174 - SO0152 0.50 +0.3
161,174 - SO0152 0.50 -0.2
161,174 - SO0152 0.50 -0.2
161,177 + SO0152 0.50 +0.4

Or see this region's nucleotide sequence