Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3147

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3146 and DvMF_3147 are separated by 273 nucleotidesDvMF_3147 and DvMF_3148 are separated by 148 nucleotidesDvMF_3148 and DvMF_3149 are separated by 92 nucleotides DvMF_3146: DvMF_3146 - extracellular solute-binding protein family 3 (RefSeq), at 3,969,273 to 3,970,139 _3146 DvMF_3147: DvMF_3147 - alpha-glucan phosphorylase (RefSeq), at 3,970,413 to 3,972,983 _3147 DvMF_3148: DvMF_3148 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (RefSeq), at 3,973,132 to 3,973,641 _3148 DvMF_3149: DvMF_3149 - acetylornithine aminotransferase (RefSeq), at 3,973,734 to 3,974,942 _3149 Position (kb) 3970 3971 3972 3973Strain fitness (log2 ratio) -2 -1 0 1at 3969.494 kb on + strand, within DvMF_3146at 3969.703 kb on + strand, within DvMF_3146at 3969.857 kb on + strand, within DvMF_3146at 3970.032 kb on - strand, within DvMF_3146at 3970.101 kb on + strandat 3970.130 kb on + strandat 3970.177 kb on - strandat 3970.182 kb on - strandat 3970.187 kb on - strandat 3970.650 kb on - strandat 3970.671 kb on + strand, within DvMF_3147at 3970.880 kb on - strand, within DvMF_3147at 3970.880 kb on - strand, within DvMF_3147at 3970.950 kb on + strand, within DvMF_3147at 3971.304 kb on + strand, within DvMF_3147at 3971.390 kb on - strand, within DvMF_3147at 3971.458 kb on - strand, within DvMF_3147at 3971.459 kb on - strand, within DvMF_3147at 3971.499 kb on + strand, within DvMF_3147at 3971.499 kb on + strand, within DvMF_3147at 3971.755 kb on + strand, within DvMF_3147at 3971.755 kb on + strand, within DvMF_3147at 3971.763 kb on - strand, within DvMF_3147at 3971.810 kb on + strand, within DvMF_3147at 3971.833 kb on + strand, within DvMF_3147at 3972.180 kb on - strand, within DvMF_3147at 3972.269 kb on + strand, within DvMF_3147at 3972.340 kb on - strand, within DvMF_3147at 3972.632 kb on - strand, within DvMF_3147at 3972.782 kb on + strandat 3972.782 kb on + strandat 3972.937 kb on + strandat 3973.408 kb on - strand, within DvMF_3148

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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3,969,494 + DvMF_3146 0.25 -0.7
3,969,703 + DvMF_3146 0.50 +0.1
3,969,857 + DvMF_3146 0.67 -0.3
3,970,032 - DvMF_3146 0.88 -0.4
3,970,101 + -0.5
3,970,130 + -0.0
3,970,177 - -0.3
3,970,182 - +0.3
3,970,187 - -1.3
3,970,650 - +0.5
3,970,671 + DvMF_3147 0.10 +0.0
3,970,880 - DvMF_3147 0.18 -0.1
3,970,880 - DvMF_3147 0.18 -1.3
3,970,950 + DvMF_3147 0.21 -0.9
3,971,304 + DvMF_3147 0.35 -0.5
3,971,390 - DvMF_3147 0.38 -0.3
3,971,458 - DvMF_3147 0.41 -0.2
3,971,459 - DvMF_3147 0.41 -0.2
3,971,499 + DvMF_3147 0.42 -1.0
3,971,499 + DvMF_3147 0.42 -1.4
3,971,755 + DvMF_3147 0.52 -1.0
3,971,755 + DvMF_3147 0.52 -0.0
3,971,763 - DvMF_3147 0.53 -1.4
3,971,810 + DvMF_3147 0.54 +0.0
3,971,833 + DvMF_3147 0.55 -1.6
3,972,180 - DvMF_3147 0.69 -0.5
3,972,269 + DvMF_3147 0.72 -0.2
3,972,340 - DvMF_3147 0.75 -0.3
3,972,632 - DvMF_3147 0.86 -0.6
3,972,782 + -0.0
3,972,782 + +0.3
3,972,937 + -0.0
3,973,408 - DvMF_3148 0.54 -2.5

Or see this region's nucleotide sequence