Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1855

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1854 and DvMF_1855 are separated by 2 nucleotidesDvMF_1855 and DvMF_1856 are separated by 56 nucleotidesDvMF_1856 and DvMF_1857 are separated by 303 nucleotides DvMF_1854: DvMF_1854 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,268,427 to 2,269,359 _1854 DvMF_1855: DvMF_1855 - glycosyltransferase-like protein (RefSeq), at 2,269,362 to 2,270,138 _1855 DvMF_1856: DvMF_1856 - hypothetical protein (RefSeq), at 2,270,195 to 2,270,572 _1856 DvMF_1857: DvMF_1857 - hypothetical protein (RefSeq), at 2,270,876 to 2,271,508 _1857 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -1 0 1at 2268.667 kb on - strand, within DvMF_1854at 2268.837 kb on + strand, within DvMF_1854at 2268.937 kb on + strand, within DvMF_1854at 2269.043 kb on - strand, within DvMF_1854at 2269.068 kb on + strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854at 2269.451 kb on + strand, within DvMF_1855at 2269.478 kb on - strand, within DvMF_1855at 2269.675 kb on - strand, within DvMF_1855at 2269.675 kb on - strand, within DvMF_1855at 2269.682 kb on - strand, within DvMF_1855at 2269.754 kb on + strand, within DvMF_1855at 2269.859 kb on - strand, within DvMF_1855at 2269.879 kb on + strand, within DvMF_1855at 2269.887 kb on - strand, within DvMF_1855at 2270.019 kb on - strand, within DvMF_1855at 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.192 kb on + strandat 2270.712 kb on + strandat 2270.712 kb on + strandat 2270.836 kb on + strandat 2270.861 kb on - strandat 2270.904 kb on + strandat 2270.939 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
remove
2,268,667 - DvMF_1854 0.26 -0.2
2,268,837 + DvMF_1854 0.44 -0.0
2,268,937 + DvMF_1854 0.55 -0.4
2,269,043 - DvMF_1854 0.66 -0.5
2,269,068 + DvMF_1854 0.69 -0.2
2,269,143 - DvMF_1854 0.77 -0.3
2,269,143 - DvMF_1854 0.77 -0.4
2,269,451 + DvMF_1855 0.11 +0.3
2,269,478 - DvMF_1855 0.15 -0.0
2,269,675 - DvMF_1855 0.40 -0.1
2,269,675 - DvMF_1855 0.40 +0.2
2,269,682 - DvMF_1855 0.41 -0.2
2,269,754 + DvMF_1855 0.50 +0.2
2,269,859 - DvMF_1855 0.64 -0.3
2,269,879 + DvMF_1855 0.67 -0.4
2,269,887 - DvMF_1855 0.68 +0.1
2,270,019 - DvMF_1855 0.85 -0.1
2,270,065 - +0.0
2,270,065 - -0.3
2,270,065 - -0.0
2,270,065 - +0.1
2,270,192 + -0.5
2,270,712 + +0.3
2,270,712 + -0.0
2,270,836 + +0.2
2,270,861 - -0.5
2,270,904 + -1.0
2,270,939 - -1.1

Or see this region's nucleotide sequence