Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1825 and DvMF_1826 are separated by 13 nucleotides DvMF_1826 and DvMF_1827 are separated by 3 nucleotides DvMF_1827 and DvMF_1828 are separated by 1 nucleotides
DvMF_1825: DvMF_1825 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,227,464 to 2,228,483
_1825
DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498
_1826
DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422
_1827
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
Position (kb)
2228
2229
2230 Strain fitness (log2 ratio)
-1
0
1 at 2227.525 kb on + strand at 2227.804 kb on - strand, within DvMF_1825 at 2227.931 kb on - strand, within DvMF_1825 at 2228.068 kb on + strand, within DvMF_1825 at 2228.111 kb on + strand, within DvMF_1825 at 2228.250 kb on - strand, within DvMF_1825 at 2228.280 kb on - strand, within DvMF_1825 at 2228.864 kb on - strand, within DvMF_1826 at 2228.891 kb on + strand, within DvMF_1826 at 2228.994 kb on - strand, within DvMF_1826 at 2229.176 kb on - strand, within DvMF_1826 at 2229.273 kb on + strand, within DvMF_1826 at 2229.385 kb on + strand, within DvMF_1826 at 2229.406 kb on - strand at 2229.665 kb on + strand, within DvMF_1827 at 2229.761 kb on - strand, within DvMF_1827 at 2229.962 kb on - strand, within DvMF_1827 at 2230.161 kb on - strand, within DvMF_1827 at 2230.328 kb on + strand, within DvMF_1827 at 2230.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml remove 2,227,525 + +0.4 2,227,804 - DvMF_1825 0.33 +0.2 2,227,931 - DvMF_1825 0.46 +0.1 2,228,068 + DvMF_1825 0.59 +0.1 2,228,111 + DvMF_1825 0.63 +0.6 2,228,250 - DvMF_1825 0.77 +1.2 2,228,280 - DvMF_1825 0.80 -0.0 2,228,864 - DvMF_1826 0.37 -0.1 2,228,891 + DvMF_1826 0.39 +0.3 2,228,994 - DvMF_1826 0.50 +0.2 2,229,176 - DvMF_1826 0.68 +0.3 2,229,273 + DvMF_1826 0.77 +0.3 2,229,385 + DvMF_1826 0.89 +0.1 2,229,406 - +0.1 2,229,665 + DvMF_1827 0.18 -0.2 2,229,761 - DvMF_1827 0.28 +0.2 2,229,962 - DvMF_1827 0.50 +0.3 2,230,161 - DvMF_1827 0.72 +0.4 2,230,328 + DvMF_1827 0.90 +0.1 2,230,472 - -0.6
Or see this region's nucleotide sequence