Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1826

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1825 and DvMF_1826 are separated by 13 nucleotidesDvMF_1826 and DvMF_1827 are separated by 3 nucleotidesDvMF_1827 and DvMF_1828 are separated by 1 nucleotides DvMF_1825: DvMF_1825 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,227,464 to 2,228,483 _1825 DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498 _1826 DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422 _1827 DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401 _1828 Position (kb) 2228 2229 2230Strain fitness (log2 ratio) -1 0 1at 2227.525 kb on + strandat 2227.804 kb on - strand, within DvMF_1825at 2227.931 kb on - strand, within DvMF_1825at 2228.068 kb on + strand, within DvMF_1825at 2228.111 kb on + strand, within DvMF_1825at 2228.250 kb on - strand, within DvMF_1825at 2228.280 kb on - strand, within DvMF_1825at 2228.864 kb on - strand, within DvMF_1826at 2228.891 kb on + strand, within DvMF_1826at 2228.994 kb on - strand, within DvMF_1826at 2229.176 kb on - strand, within DvMF_1826at 2229.273 kb on + strand, within DvMF_1826at 2229.385 kb on + strand, within DvMF_1826at 2229.406 kb on - strandat 2229.665 kb on + strand, within DvMF_1827at 2229.761 kb on - strand, within DvMF_1827at 2229.962 kb on - strand, within DvMF_1827at 2230.161 kb on - strand, within DvMF_1827at 2230.328 kb on + strand, within DvMF_1827at 2230.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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2,227,525 + +0.4
2,227,804 - DvMF_1825 0.33 +0.2
2,227,931 - DvMF_1825 0.46 +0.1
2,228,068 + DvMF_1825 0.59 +0.1
2,228,111 + DvMF_1825 0.63 +0.6
2,228,250 - DvMF_1825 0.77 +1.2
2,228,280 - DvMF_1825 0.80 -0.0
2,228,864 - DvMF_1826 0.37 -0.1
2,228,891 + DvMF_1826 0.39 +0.3
2,228,994 - DvMF_1826 0.50 +0.2
2,229,176 - DvMF_1826 0.68 +0.3
2,229,273 + DvMF_1826 0.77 +0.3
2,229,385 + DvMF_1826 0.89 +0.1
2,229,406 - +0.1
2,229,665 + DvMF_1827 0.18 -0.2
2,229,761 - DvMF_1827 0.28 +0.2
2,229,962 - DvMF_1827 0.50 +0.3
2,230,161 - DvMF_1827 0.72 +0.4
2,230,328 + DvMF_1827 0.90 +0.1
2,230,472 - -0.6

Or see this region's nucleotide sequence