Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1760

Experiment: MoYLS4 with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1759 and DvMF_1760 are separated by 129 nucleotidesDvMF_1760 and DvMF_1761 are separated by 17 nucleotides DvMF_1759: DvMF_1759 - hypothetical protein (RefSeq), at 2,150,588 to 2,151,784 _1759 DvMF_1760: DvMF_1760 - hypothetical protein (RefSeq), at 2,151,914 to 2,155,576 _1760 DvMF_1761: DvMF_1761 - Chloride channel core (RefSeq), at 2,155,594 to 2,157,411 _1761 Position (kb) 2151 2152 2153 2154 2155 2156Strain fitness (log2 ratio) -1 0 1at 2150.921 kb on + strand, within DvMF_1759at 2150.955 kb on + strand, within DvMF_1759at 2151.034 kb on + strand, within DvMF_1759at 2151.338 kb on - strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759at 2151.340 kb on + strand, within DvMF_1759at 2151.404 kb on - strand, within DvMF_1759at 2151.429 kb on + strand, within DvMF_1759at 2151.569 kb on + strand, within DvMF_1759at 2151.764 kb on + strandat 2151.884 kb on + strandat 2151.892 kb on - strandat 2151.951 kb on + strandat 2151.951 kb on + strandat 2151.959 kb on - strandat 2151.995 kb on - strandat 2151.995 kb on - strandat 2152.202 kb on + strandat 2152.290 kb on + strand, within DvMF_1760at 2152.385 kb on - strand, within DvMF_1760at 2152.397 kb on + strand, within DvMF_1760at 2152.408 kb on + strand, within DvMF_1760at 2152.426 kb on - strand, within DvMF_1760at 2152.833 kb on - strand, within DvMF_1760at 2152.886 kb on + strand, within DvMF_1760at 2152.994 kb on - strand, within DvMF_1760at 2153.186 kb on - strand, within DvMF_1760at 2153.186 kb on - strand, within DvMF_1760at 2153.454 kb on - strand, within DvMF_1760at 2153.454 kb on - strand, within DvMF_1760at 2153.888 kb on + strand, within DvMF_1760at 2153.927 kb on - strand, within DvMF_1760at 2153.980 kb on + strand, within DvMF_1760at 2154.137 kb on + strand, within DvMF_1760at 2154.278 kb on + strand, within DvMF_1760at 2154.565 kb on - strand, within DvMF_1760at 2154.939 kb on - strand, within DvMF_1760at 2155.067 kb on + strand, within DvMF_1760at 2155.070 kb on - strand, within DvMF_1760at 2155.088 kb on + strand, within DvMF_1760at 2155.366 kb on - strandat 2155.500 kb on - strandat 2155.578 kb on - strandat 2155.742 kb on + strandat 2155.785 kb on - strand, within DvMF_1761at 2155.800 kb on + strand, within DvMF_1761at 2155.820 kb on + strand, within DvMF_1761at 2155.942 kb on - strand, within DvMF_1761at 2156.097 kb on + strand, within DvMF_1761at 2156.327 kb on - strand, within DvMF_1761at 2156.494 kb on + strand, within DvMF_1761at 2156.500 kb on - strand, within DvMF_1761

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/ml
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2,150,921 + DvMF_1759 0.28 -0.6
2,150,955 + DvMF_1759 0.31 -0.1
2,151,034 + DvMF_1759 0.37 -0.3
2,151,338 - DvMF_1759 0.63 -0.8
2,151,340 + DvMF_1759 0.63 -0.3
2,151,340 + DvMF_1759 0.63 -0.1
2,151,340 + DvMF_1759 0.63 -0.2
2,151,404 - DvMF_1759 0.68 -0.3
2,151,429 + DvMF_1759 0.70 -0.2
2,151,569 + DvMF_1759 0.82 -0.0
2,151,764 + -0.1
2,151,884 + -0.4
2,151,892 - +0.1
2,151,951 + -0.2
2,151,951 + -0.2
2,151,959 - +0.1
2,151,995 - -0.1
2,151,995 - -0.2
2,152,202 + -0.3
2,152,290 + DvMF_1760 0.10 -0.2
2,152,385 - DvMF_1760 0.13 -0.2
2,152,397 + DvMF_1760 0.13 -0.0
2,152,408 + DvMF_1760 0.13 -0.1
2,152,426 - DvMF_1760 0.14 +0.5
2,152,833 - DvMF_1760 0.25 -0.0
2,152,886 + DvMF_1760 0.27 +0.4
2,152,994 - DvMF_1760 0.29 -0.1
2,153,186 - DvMF_1760 0.35 -0.1
2,153,186 - DvMF_1760 0.35 +0.3
2,153,454 - DvMF_1760 0.42 -0.4
2,153,454 - DvMF_1760 0.42 -0.3
2,153,888 + DvMF_1760 0.54 -0.3
2,153,927 - DvMF_1760 0.55 -0.3
2,153,980 + DvMF_1760 0.56 -0.0
2,154,137 + DvMF_1760 0.61 -0.1
2,154,278 + DvMF_1760 0.65 -0.1
2,154,565 - DvMF_1760 0.72 -0.4
2,154,939 - DvMF_1760 0.83 -0.0
2,155,067 + DvMF_1760 0.86 +0.1
2,155,070 - DvMF_1760 0.86 +0.1
2,155,088 + DvMF_1760 0.87 -0.1
2,155,366 - -0.0
2,155,500 - +0.0
2,155,578 - +0.2
2,155,742 + -0.1
2,155,785 - DvMF_1761 0.11 +0.1
2,155,800 + DvMF_1761 0.11 +0.1
2,155,820 + DvMF_1761 0.12 -0.1
2,155,942 - DvMF_1761 0.19 -0.0
2,156,097 + DvMF_1761 0.28 +0.5
2,156,327 - DvMF_1761 0.40 -0.0
2,156,494 + DvMF_1761 0.50 -0.3
2,156,500 - DvMF_1761 0.50 -1.0

Or see this region's nucleotide sequence