Strain Fitness in Shewanella loihica PV-4

Strain Fitness in Shewanella loihica PV-4 around Shew_3863

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D-Maltose (C)
				remove
4,593,790	-			-0.0
4,593,815	+			-0.5
4,593,815	+			-1.2
4,593,815	+			+0.1
4,593,815	+			-1.4
4,593,815	+			+0.7
4,593,823	-			-1.7
4,593,823	-			-0.8
4,593,823	-			+2.6
4,594,014	-	Shew_3862	0.19	-1.4
4,594,048	+	Shew_3862	0.25	+0.3
4,594,048	+	Shew_3862	0.25	-1.6
4,594,068	+	Shew_3862	0.29	-0.6
4,594,229	+	Shew_3862	0.56	-0.7
4,594,366	-	Shew_3862	0.80	+0.3
4,594,370	+	Shew_3862	0.80	-0.3
4,594,378	-	Shew_3862	0.82	+0.2
4,594,381	+	Shew_3862	0.82	-0.0
4,594,417	-	Shew_3862	0.88	+1.7
4,594,487	+			-0.1
4,594,488	+			-0.2
4,594,488	+			-3.5
4,594,496	+			+0.8
4,594,506	+			-0.4
4,594,528	-			-2.8
4,594,539	+			-1.8
4,594,544	+			-0.8
4,594,544	+			+0.3
4,594,544	+			-0.5
4,594,552	-			+1.6
4,594,633	-			-1.0
4,594,759	-	Shew_3863	0.20	-3.4
4,594,764	-	Shew_3863	0.20	+0.6
4,594,816	-	Shew_3863	0.26	+1.6
4,594,830	-	Shew_3863	0.27	-3.5
4,594,885	-	Shew_3863	0.33	-0.0
4,594,890	-	Shew_3863	0.33	-1.9
4,594,909	-	Shew_3863	0.35	-0.8
4,595,171	-	Shew_3863	0.61	-2.2
4,595,268	-	Shew_3863	0.71	-1.9
4,595,283	-	Shew_3863	0.73	-2.8
4,595,401	-	Shew_3863	0.85	-3.3
4,595,401	-	Shew_3863	0.85	-0.7
4,595,417	-	Shew_3863	0.86	-1.2
4,595,426	-	Shew_3863	0.87	-2.2
4,595,426	-	Shew_3863	0.87	-0.0
4,595,426	-	Shew_3863	0.87	-3.3
4,595,426	-	Shew_3863	0.87	-1.2
4,595,426	-	Shew_3863	0.87	-1.7
4,595,426	-	Shew_3863	0.87	+0.6
4,595,436	-	Shew_3863	0.88	-1.0
4,595,436	-	Shew_3863	0.88	+1.6
4,595,436	-	Shew_3863	0.88	-1.7
4,595,436	-	Shew_3863	0.88	-1.8
4,595,436	-	Shew_3863	0.88	-1.5
4,595,436	-	Shew_3863	0.88	+1.6
4,595,510	+			-1.6
4,595,516	-			-2.5
4,595,518	-			-1.2
4,595,518	-			-1.8
4,595,518	-			-1.1
4,595,518	-			-1.0
4,595,518	-			-1.4
4,595,542	-			+0.8
4,595,546	-			+0.8
4,595,556	+			-1.3
4,595,564	-			+0.2
4,595,568	+			+0.8
4,595,568	+			+1.2
4,595,576	-			-1.2
4,595,576	-			-0.3
4,595,576	-			+0.9
4,595,578	+			-0.3
4,595,590	+			+0.7
4,595,590	+			-0.3
4,595,598	-			+0.6
4,595,601	-			+1.8
4,595,633	-			+2.2
4,595,653	+			+0.7
4,595,658	-			-0.0
4,595,660	-			-0.9
4,595,684	+			+0.1
4,595,701	-			+0.6
4,595,702	+			+0.4
4,595,703	-			+1.3
4,595,703	-			-0.8
4,595,703	-			+0.7
4,595,726	+			-0.1
4,595,747	+			+0.6
4,595,747	+			-1.8
4,595,747	+			-1.5
4,595,747	+			-0.7
4,595,755	-			+0.4
4,595,760	+			+0.3
4,595,760	+			+0.2
4,595,761	-			-1.2
4,595,799	+			-2.7
4,595,799	+			-0.8
4,595,799	+			+0.1
4,595,799	+			-0.1
4,595,799	+			+0.5
4,595,799	+			+0.3
4,595,801	+			+0.3
4,595,807	-			+1.0
4,595,807	-			+1.3
4,595,807	-			+1.3
4,595,807	-			+0.8
4,595,807	-			+1.6
4,595,807	-			+0.2
4,595,808	+			-0.3
4,595,808	+			-0.3
4,595,808	+			+0.2
4,595,808	+			+0.4
4,595,808	+			-0.1
4,595,808	+			-0.2
4,595,808	+			+0.2
4,595,808	+			+0.6
4,595,808	+			-1.0
4,595,808	+			+0.2
4,595,808	+			+0.7
4,595,808	+			+1.1
4,595,808	+			-0.2
4,595,808	+			-2.5
4,595,808	+			+0.7
4,595,808	+			+0.5
4,595,808	+			+0.3
4,595,808	+			+0.6
4,595,808	+			-0.9
4,595,808	+			+1.1
4,595,808	+			-0.8
4,595,808	+			+0.4
4,595,809	+			-2.2
4,595,809	+			+2.1
4,595,809	+			-0.4
4,595,809	+			+0.9
4,595,809	+			-1.1
4,595,816	-			+1.4
4,595,816	-			+2.8
4,595,816	-			+0.0
4,595,816	-			-1.8
4,595,816	-			+0.6
4,595,816	-			+1.3
4,595,816	-			+1.2
4,595,816	-			+0.8
4,595,816	-			+1.7
4,595,816	-			+0.6
4,595,816	-			+0.2
4,595,816	-			-0.3
4,595,816	-			-0.4
4,595,816	-			+0.7
4,595,816	-			+1.1
4,595,817	-			-2.1
4,595,817	-			+1.7
4,595,817	-			+1.0
4,595,817	-			+1.1
4,595,817	-			+0.7
4,595,817	-			-0.3
4,595,817	-			+1.8
4,595,823	-			+1.0
4,595,823	-			+1.6
4,595,827	-			-0.7
4,595,832	-	Shew_3864	0.10	-0.0
4,595,859	-	Shew_3864	0.11	+1.0
4,595,864	-	Shew_3864	0.11	+1.7
4,595,874	+	Shew_3864	0.12	+1.0
4,595,888	+	Shew_3864	0.12	-0.7
4,595,888	+	Shew_3864	0.12	-0.1
4,595,896	+	Shew_3864	0.13	+2.1
4,595,896	+	Shew_3864	0.13	-0.1
4,595,896	+	Shew_3864	0.13	+0.8
4,595,896	-	Shew_3864	0.13	+0.8
4,595,896	+	Shew_3864	0.13	+0.2
4,595,896	+	Shew_3864	0.13	-0.6
4,595,896	+	Shew_3864	0.13	-1.9
4,595,896	-	Shew_3864	0.13	-1.8
4,595,902	-	Shew_3864	0.13	+0.8
4,595,903	+	Shew_3864	0.13	-1.1
4,595,904	-	Shew_3864	0.13	-1.2
4,595,904	-	Shew_3864	0.13	+1.3
4,595,904	-	Shew_3864	0.13	+0.8
4,595,904	-	Shew_3864	0.13	+0.1
4,595,904	-	Shew_3864	0.13	-1.2
4,595,904	-	Shew_3864	0.13	+0.8
4,595,904	-	Shew_3864	0.13	+0.5
4,595,904	-	Shew_3864	0.13	+2.5
4,595,911	-	Shew_3864	0.13	+2.4
4,595,911	-	Shew_3864	0.13	+0.9
4,595,927	-	Shew_3864	0.14	+0.3
4,595,944	+	Shew_3864	0.15	+0.5
4,595,944	+	Shew_3864	0.15	+0.3
4,595,944	+	Shew_3864	0.15	+2.8
4,595,949	-	Shew_3864	0.15	+2.6
4,595,952	-	Shew_3864	0.15	-0.0
4,595,954	-	Shew_3864	0.15	+0.2
4,595,972	+	Shew_3864	0.16	-0.6
4,595,988	-	Shew_3864	0.16	-1.0
4,596,009	+	Shew_3864	0.17	+1.0
4,596,031	+	Shew_3864	0.18	-0.0
4,596,039	-	Shew_3864	0.18	+0.4
4,596,039	-	Shew_3864	0.18	+1.9
4,596,044	+	Shew_3864	0.19	-0.2
4,596,044	+	Shew_3864	0.19	+0.4
4,596,044	+	Shew_3864	0.19	-0.9
4,596,044	+	Shew_3864	0.19	-0.1
4,596,044	+	Shew_3864	0.19	+0.1
4,596,045	+	Shew_3864	0.19	+0.3
4,596,045	+	Shew_3864	0.19	+1.6
4,596,045	+	Shew_3864	0.19	+0.1
4,596,045	+	Shew_3864	0.19	+0.5
4,596,045	+	Shew_3864	0.19	-0.5
4,596,052	-	Shew_3864	0.19	+0.2
4,596,053	-	Shew_3864	0.19	+1.2
4,596,053	-	Shew_3864	0.19	+0.6
4,596,053	-	Shew_3864	0.19	-0.1
4,596,053	-	Shew_3864	0.19	+1.0
4,596,053	-	Shew_3864	0.19	-0.6
4,596,055	+	Shew_3864	0.19	-2.3
4,596,055	+	Shew_3864	0.19	+0.2
4,596,055	+	Shew_3864	0.19	+0.5
4,596,055	+	Shew_3864	0.19	-0.5
4,596,063	-	Shew_3864	0.19	-0.8
4,596,069	+	Shew_3864	0.19	-0.3
4,596,089	+	Shew_3864	0.20	-0.4
4,596,089	+	Shew_3864	0.20	-0.2
4,596,089	+	Shew_3864	0.20	+0.8
4,596,089	+	Shew_3864	0.20	+1.5
4,596,089	+	Shew_3864	0.20	-0.2
4,596,089	+	Shew_3864	0.20	-0.1
4,596,089	+	Shew_3864	0.20	+0.8
4,596,089	+	Shew_3864	0.20	+0.6
4,596,089	+	Shew_3864	0.20	-0.0
4,596,097	-	Shew_3864	0.21	+0.3
4,596,097	-	Shew_3864	0.21	+0.6
4,596,097	-	Shew_3864	0.21	+0.8
4,596,097	-	Shew_3864	0.21	+0.8
4,596,097	-	Shew_3864	0.21	+0.7
4,596,097	-	Shew_3864	0.21	+5.2
4,596,097	-	Shew_3864	0.21	-0.5
4,596,097	-	Shew_3864	0.21	-0.1
4,596,097	-	Shew_3864	0.21	+1.5
4,596,097	-	Shew_3864	0.21	+0.2
4,596,097	-	Shew_3864	0.21	-2.9
4,596,097	-	Shew_3864	0.21	-1.2
4,596,097	-	Shew_3864	0.21	+0.8
4,596,097	-	Shew_3864	0.21	+0.7
4,596,097	-	Shew_3864	0.21	-0.7
4,596,097	-	Shew_3864	0.21	+0.1
4,596,113	+	Shew_3864	0.21	+0.0
4,596,113	+	Shew_3864	0.21	-0.8
4,596,121	-	Shew_3864	0.22	+1.4
4,596,159	-	Shew_3864	0.23	+0.1
4,596,177	+	Shew_3864	0.24	-0.4
4,596,177	+	Shew_3864	0.24	+0.3
4,596,179	+	Shew_3864	0.24	-1.7
4,596,185	-	Shew_3864	0.24	-0.0
4,596,185	-	Shew_3864	0.24	+2.4
4,596,304	+	Shew_3864	0.29	+0.5
4,596,305	+	Shew_3864	0.29	+0.1
4,596,305	+	Shew_3864	0.29	-1.2
4,596,305	+	Shew_3864	0.29	+0.1
4,596,305	+	Shew_3864	0.29	-0.2
4,596,305	+	Shew_3864	0.29	-0.8
4,596,305	+	Shew_3864	0.29	+0.3
4,596,305	+	Shew_3864	0.29	-0.2
4,596,305	+	Shew_3864	0.29	-2.0
4,596,305	+	Shew_3864	0.29	-1.2
4,596,305	+	Shew_3864	0.29	-0.1
4,596,305	+	Shew_3864	0.29	+0.3
4,596,305	+	Shew_3864	0.29	-0.2
4,596,305	+	Shew_3864	0.29	-1.8
4,596,305	+	Shew_3864	0.29	+1.0
4,596,305	+	Shew_3864	0.29	-0.2
4,596,305	+	Shew_3864	0.29	-1.8
4,596,305	+	Shew_3864	0.29	-1.1
4,596,305	+	Shew_3864	0.29	-0.3
4,596,305	+	Shew_3864	0.29	+0.5
4,596,305	+	Shew_3864	0.29	-0.2
4,596,305	+	Shew_3864	0.29	-1.1
4,596,305	+	Shew_3864	0.29	-0.9
4,596,305	+	Shew_3864	0.29	+0.4
4,596,305	+	Shew_3864	0.29	+0.4
4,596,305	+	Shew_3864	0.29	+1.4
4,596,305	+	Shew_3864	0.29	+1.3
4,596,305	+	Shew_3864	0.29	-0.5
4,596,305	+	Shew_3864	0.29	-1.9
4,596,305	+	Shew_3864	0.29	+0.3
4,596,305	+	Shew_3864	0.29	+0.1
4,596,305	+	Shew_3864	0.29	-0.1
4,596,305	+	Shew_3864	0.29	-3.0
4,596,305	+	Shew_3864	0.29	-0.1
4,596,305	+	Shew_3864	0.29	-2.4
4,596,305	+	Shew_3864	0.29	-0.9
4,596,305	+	Shew_3864	0.29	+0.2
4,596,305	+	Shew_3864	0.29	+0.2
4,596,305	+	Shew_3864	0.29	+0.3
4,596,305	+	Shew_3864	0.29	+1.2
4,596,305	+	Shew_3864	0.29	+0.9
4,596,305	+	Shew_3864	0.29	+0.5
4,596,305	+	Shew_3864	0.29	+0.5
4,596,305	+	Shew_3864	0.29	+0.5
4,596,305	+	Shew_3864	0.29	-0.3
4,596,305	+	Shew_3864	0.29	-0.2
4,596,310	+	Shew_3864	0.29	+0.0
4,596,310	+	Shew_3864	0.29	-2.1
4,596,310	+	Shew_3864	0.29	-0.0
4,596,310	+	Shew_3864	0.29	+0.0
4,596,310	+	Shew_3864	0.29	+0.9
4,596,310	+	Shew_3864	0.29	-0.3
4,596,310	+	Shew_3864	0.29	+0.2
4,596,310	+	Shew_3864	0.29	-0.8
4,596,310	+	Shew_3864	0.29	+0.0
4,596,310	+	Shew_3864	0.29	-0.6
4,596,310	+	Shew_3864	0.29	+0.5
4,596,310	+	Shew_3864	0.29	+0.9
4,596,313	-	Shew_3864	0.29	+0.9
4,596,313	-	Shew_3864	0.29	+0.8
4,596,313	-	Shew_3864	0.29	-0.1
4,596,313	-	Shew_3864	0.29	+1.1
4,596,313	-	Shew_3864	0.29	+1.1
4,596,313	-	Shew_3864	0.29	+0.1
4,596,313	-	Shew_3864	0.29	+0.8
4,596,313	-	Shew_3864	0.29	+0.6
4,596,313	-	Shew_3864	0.29	-0.0
4,596,313	-	Shew_3864	0.29	+0.4
4,596,313	-	Shew_3864	0.29	-1.4
4,596,313	-	Shew_3864	0.29	-0.3
4,596,313	-	Shew_3864	0.29	+1.4
4,596,313	-	Shew_3864	0.29	+1.5
4,596,313	-	Shew_3864	0.29	-1.8
4,596,313	-	Shew_3864	0.29	+1.6
4,596,313	-	Shew_3864	0.29	+1.3
4,596,313	-	Shew_3864	0.29	+0.1
4,596,313	-	Shew_3864	0.29	-1.0
4,596,313	-	Shew_3864	0.29	+0.5
4,596,313	-	Shew_3864	0.29	+1.0
4,596,313	-	Shew_3864	0.29	+0.8
4,596,313	-	Shew_3864	0.29	+0.2
4,596,313	-	Shew_3864	0.29	-0.7
4,596,313	-	Shew_3864	0.29	-2.3
4,596,313	-	Shew_3864	0.29	+0.9
4,596,313	-	Shew_3864	0.29	-0.0
4,596,315	+	Shew_3864	0.29	+1.8
4,596,315	+	Shew_3864	0.29	-2.0
4,596,315	+	Shew_3864	0.29	-0.9
4,596,315	+	Shew_3864	0.29	+0.4
4,596,315	+	Shew_3864	0.29	+0.5
4,596,315	+	Shew_3864	0.29	+0.1
4,596,315	+	Shew_3864	0.29	+1.6
4,596,315	+	Shew_3864	0.29	+0.6
4,596,315	+	Shew_3864	0.29	+0.0
4,596,315	+	Shew_3864	0.29	+0.9
4,596,315	+	Shew_3864	0.29	-2.1
4,596,315	+	Shew_3864	0.29	+3.6
4,596,315	+	Shew_3864	0.29	+0.2
4,596,315	+	Shew_3864	0.29	+0.6
4,596,315	+	Shew_3864	0.29	+1.1
4,596,315	+	Shew_3864	0.29	-0.1
4,596,315	+	Shew_3864	0.29	+0.4
4,596,318	-	Shew_3864	0.29	+0.5
4,596,318	-	Shew_3864	0.29	-0.2
4,596,318	-	Shew_3864	0.29	-0.5
4,596,318	-	Shew_3864	0.29	+0.0
4,596,318	-	Shew_3864	0.29	-2.4
4,596,318	-	Shew_3864	0.29	-0.3
4,596,318	-	Shew_3864	0.29	-1.2
4,596,318	-	Shew_3864	0.29	+0.9
4,596,318	-	Shew_3864	0.29	-1.8
4,596,318	-	Shew_3864	0.29	-0.6
4,596,323	-	Shew_3864	0.29	-0.1
4,596,323	-	Shew_3864	0.29	-0.8
4,596,323	-	Shew_3864	0.29	+0.4
4,596,323	-	Shew_3864	0.29	-0.2
4,596,323	-	Shew_3864	0.29	-0.1
4,596,323	-	Shew_3864	0.29	+0.5
4,596,323	-	Shew_3864	0.29	+1.3
4,596,323	-	Shew_3864	0.29	+1.2
4,596,323	-	Shew_3864	0.29	+2.1
4,596,323	-	Shew_3864	0.29	+0.2
4,596,323	-	Shew_3864	0.29	+0.5
4,596,323	-	Shew_3864	0.29	+0.2
4,596,323	-	Shew_3864	0.29	+0.6
4,596,323	-	Shew_3864	0.29	+0.9
4,596,323	-	Shew_3864	0.29	+0.0
4,596,323	-	Shew_3864	0.29	-0.3
4,596,323	-	Shew_3864	0.29	+1.0
4,596,323	-	Shew_3864	0.29	+0.4
4,596,323	-	Shew_3864	0.29	+1.8
4,596,328	+	Shew_3864	0.30	+0.8
4,596,328	+	Shew_3864	0.30	-1.2
4,596,328	+	Shew_3864	0.30	+2.3
4,596,328	+	Shew_3864	0.30	-2.0
4,596,328	+	Shew_3864	0.30	-0.2
4,596,336	-	Shew_3864	0.30	+0.7
4,596,336	-	Shew_3864	0.30	+0.8
4,596,336	-	Shew_3864	0.30	+0.8
4,596,336	-	Shew_3864	0.30	-1.3
4,596,350	+	Shew_3864	0.31	-2.3
4,596,350	+	Shew_3864	0.31	+0.5
4,596,350	+	Shew_3864	0.31	+1.6
4,596,350	+	Shew_3864	0.31	+0.7
4,596,350	+	Shew_3864	0.31	+1.2
4,596,358	-	Shew_3864	0.31	+1.0
4,596,358	-	Shew_3864	0.31	+0.4
4,596,358	-	Shew_3864	0.31	+1.1
4,596,365	-	Shew_3864	0.31	+0.3
4,596,365	-	Shew_3864	0.31	-0.6
4,596,367	+	Shew_3864	0.31	-0.6
4,596,367	+	Shew_3864	0.31	-0.6
4,596,367	-	Shew_3864	0.31	-2.6
4,596,367	+	Shew_3864	0.31	+0.3
4,596,367	+	Shew_3864	0.31	-3.6
4,596,367	+	Shew_3864	0.31	+0.0
4,596,369	+	Shew_3864	0.31	-2.3
4,596,375	-	Shew_3864	0.32	-0.2
4,596,375	-	Shew_3864	0.32	-0.2
4,596,377	-	Shew_3864	0.32	+0.7
4,596,397	+	Shew_3864	0.32	+0.0
4,596,397	+	Shew_3864	0.32	+0.4
4,596,405	+	Shew_3864	0.33	+0.9
4,596,413	-	Shew_3864	0.33	+1.4
4,596,414	+	Shew_3864	0.33	-0.1
4,596,419	+	Shew_3864	0.33	+0.0
4,596,424	+	Shew_3864	0.33	+0.7
4,596,437	+	Shew_3864	0.34	+0.1
4,596,452	+	Shew_3864	0.35	+0.5
4,596,454	+	Shew_3864	0.35	+0.9
4,596,461	+	Shew_3864	0.35	-0.6
4,596,462	-	Shew_3864	0.35	+0.6
4,596,463	+	Shew_3864	0.35	-0.5
4,596,463	+	Shew_3864	0.35	+1.1
4,596,471	-	Shew_3864	0.35	+0.3
4,596,471	-	Shew_3864	0.35	+0.7
4,596,471	-	Shew_3864	0.35	-1.7
4,596,471	-	Shew_3864	0.35	+0.2
4,596,479	-	Shew_3864	0.36	-0.8
4,596,485	-	Shew_3864	0.36	+1.5
4,596,497	-	Shew_3864	0.36	+0.7
4,596,503	-	Shew_3864	0.37	+0.4
4,596,505	+	Shew_3864	0.37	-0.1
4,596,509	+	Shew_3864	0.37	+0.4
4,596,527	+	Shew_3864	0.38	-0.0
4,596,528	+	Shew_3864	0.38	+0.5
4,596,528	+	Shew_3864	0.38	+0.5
4,596,542	+	Shew_3864	0.38	+0.1
4,596,545	-	Shew_3864	0.38	+1.5
4,596,547	+	Shew_3864	0.38	+0.5

Or see this region's nucleotide sequence