Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3476 and Shew_3477 overlap by 30 nucleotides Shew_3477 and Shew_3478 are separated by 186 nucleotides Shew_3478 and rpmG are separated by 323 nucleotides rpmG and Shew_3480 are separated by 6 nucleotides Shew_3480 and Shew_3481 are separated by 123 nucleotides
Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834
_3476
Shew_3477: Shew_3477 - hypothetical protein (RefSeq), at 4,163,805 to 4,164,344
_3477
Shew_3478: Shew_3478 - N-acetylglutamate synthase (RefSeq), at 4,164,531 to 4,165,853
_3478
Shew_3479: rpmG - 50S ribosomal protein L33 (RefSeq), at 4,166,177 to 4,166,350
rpmG
Shew_3480: Shew_3480 - ribosomal protein L28 (RefSeq), at 4,166,357 to 4,166,593
_3480
Shew_3481: Shew_3481 - DNA repair protein RadC (RefSeq), at 4,166,717 to 4,167,418
_3481
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 4163.755 kb on - strand at 4163.960 kb on + strand, within Shew_3477 at 4164.097 kb on - strand, within Shew_3477 at 4164.494 kb on + strand at 4164.494 kb on + strand at 4164.502 kb on - strand at 4164.502 kb on - strand at 4164.779 kb on - strand, within Shew_3478 at 4164.809 kb on - strand, within Shew_3478 at 4164.810 kb on - strand, within Shew_3478 at 4164.908 kb on - strand, within Shew_3478 at 4164.961 kb on + strand, within Shew_3478 at 4165.107 kb on - strand, within Shew_3478 at 4165.200 kb on + strand, within Shew_3478 at 4165.266 kb on - strand, within Shew_3478 at 4165.452 kb on - strand, within Shew_3478 at 4165.480 kb on + strand, within Shew_3478 at 4165.650 kb on - strand, within Shew_3478 at 4165.814 kb on - strand at 4166.022 kb on + strand at 4166.056 kb on + strand at 4166.056 kb on + strand at 4166.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,163,755 - -0.5 4,163,960 + Shew_3477 0.29 +0.7 4,164,097 - Shew_3477 0.54 +0.6 4,164,494 + +1.4 4,164,494 + +0.7 4,164,502 - +0.2 4,164,502 - -1.2 4,164,779 - Shew_3478 0.19 -5.5 4,164,809 - Shew_3478 0.21 -6.0 4,164,810 - Shew_3478 0.21 -7.6 4,164,908 - Shew_3478 0.28 -5.1 4,164,961 + Shew_3478 0.33 -0.6 4,165,107 - Shew_3478 0.44 -7.0 4,165,200 + Shew_3478 0.51 -7.2 4,165,266 - Shew_3478 0.56 -8.0 4,165,452 - Shew_3478 0.70 -2.9 4,165,480 + Shew_3478 0.72 -2.2 4,165,650 - Shew_3478 0.85 -6.5 4,165,814 - -5.8 4,166,022 + +0.5 4,166,056 + +0.4 4,166,056 + +1.5 4,166,073 - +0.4
Or see this region's nucleotide sequence