Strain Fitness in Shewanella loihica PV-4 around Shew_3474

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3473 and Shew_3474 are separated by 69 nucleotidesShew_3474 and Shew_3475 are separated by 238 nucleotidesShew_3475 and Shew_3476 are separated by 156 nucleotides Shew_3473: Shew_3473 - response regulator receiver protein (RefSeq), at 4,158,437 to 4,160,185 _3473 Shew_3474: Shew_3474 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,160,255 to 4,162,087 _3474 Shew_3475: Shew_3475 - hypothetical protein (RefSeq), at 4,162,326 to 4,162,790 _3475 Shew_3476: Shew_3476 - transporter DMT superfamily protein (RefSeq), at 4,162,947 to 4,163,834 _3476 Position (kb) 4160 4161 4162 4163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4159.442 kb on - strand, within Shew_3473at 4159.476 kb on - strand, within Shew_3473at 4159.519 kb on - strand, within Shew_3473at 4159.651 kb on + strand, within Shew_3473at 4159.770 kb on - strand, within Shew_3473at 4159.817 kb on - strand, within Shew_3473at 4159.999 kb on - strand, within Shew_3473at 4160.455 kb on + strand, within Shew_3474at 4160.529 kb on - strand, within Shew_3474at 4160.579 kb on - strand, within Shew_3474at 4160.583 kb on + strand, within Shew_3474at 4160.616 kb on + strand, within Shew_3474at 4160.673 kb on + strand, within Shew_3474at 4160.793 kb on + strand, within Shew_3474at 4160.866 kb on + strand, within Shew_3474at 4160.866 kb on + strand, within Shew_3474at 4160.874 kb on - strand, within Shew_3474at 4161.971 kb on - strandat 4161.994 kb on - strandat 4161.994 kb on - strandat 4162.141 kb on + strandat 4162.307 kb on - strandat 4162.312 kb on - strandat 4162.353 kb on - strandat 4162.632 kb on - strand, within Shew_3475at 4162.848 kb on + strandat 4162.856 kb on - strandat 4162.921 kb on + strandat 4163.023 kb on + strandat 4163.084 kb on - strand, within Shew_3476

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,159,442 - Shew_3473 0.57 +2.3
4,159,476 - Shew_3473 0.59 -0.5
4,159,519 - Shew_3473 0.62 +1.6
4,159,651 + Shew_3473 0.69 +0.0
4,159,770 - Shew_3473 0.76 +0.4
4,159,817 - Shew_3473 0.79 +1.2
4,159,999 - Shew_3473 0.89 +0.5
4,160,455 + Shew_3474 0.11 +0.5
4,160,529 - Shew_3474 0.15 +0.9
4,160,579 - Shew_3474 0.18 -4.6
4,160,583 + Shew_3474 0.18 +0.0
4,160,616 + Shew_3474 0.20 -0.1
4,160,673 + Shew_3474 0.23 +0.6
4,160,793 + Shew_3474 0.29 +0.9
4,160,866 + Shew_3474 0.33 +0.4
4,160,866 + Shew_3474 0.33 +1.0
4,160,874 - Shew_3474 0.34 -2.8
4,161,971 - +1.3
4,161,994 - +0.4
4,161,994 - -0.0
4,162,141 + -3.7
4,162,307 - +0.2
4,162,312 - -0.2
4,162,353 - -0.5
4,162,632 - Shew_3475 0.66 +0.1
4,162,848 + +0.2
4,162,856 - +0.2
4,162,921 + +1.1
4,163,023 + +0.1
4,163,084 - Shew_3476 0.15 -0.6

Or see this region's nucleotide sequence