Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3136 and Shew_3137 are separated by 368 nucleotides Shew_3137 and Shew_3138 are separated by 150 nucleotides Shew_3138 and Shew_3139 overlap by 4 nucleotides Shew_3139 and Shew_3140 are separated by 89 nucleotides
Shew_3136: Shew_3136 - FAD linked oxidase domain-containing protein (RefSeq), at 3,729,217 to 3,732,021
_3136
Shew_3137: Shew_3137 - hypothetical protein (RefSeq), at 3,732,390 to 3,732,950
_3137
Shew_3138: Shew_3138 - hypothetical protein (RefSeq), at 3,733,101 to 3,733,517
_3138
Shew_3139: Shew_3139 - hypothetical protein (RefSeq), at 3,733,514 to 3,733,828
_3139
Shew_3140: Shew_3140 - ABC-2 type transporter (RefSeq), at 3,733,918 to 3,734,706
_3140
Position (kb) 3732
3733 Strain fitness (log2 ratio) -2
-1
0
1 at 3731.604 kb on + strand, within Shew_3136 at 3731.612 kb on - strand, within Shew_3136 at 3731.717 kb on - strand, within Shew_3136 at 3732.234 kb on + strand at 3732.314 kb on + strand at 3732.586 kb on - strand, within Shew_3137 at 3732.688 kb on + strand, within Shew_3137 at 3732.815 kb on + strand, within Shew_3137 at 3733.795 kb on + strand, within Shew_3139
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,731,604 + Shew_3136 0.85 -1.2 3,731,612 - Shew_3136 0.85 +1.6 3,731,717 - Shew_3136 0.89 -0.6 3,732,234 + +0.7 3,732,314 + -0.4 3,732,586 - Shew_3137 0.35 +0.3 3,732,688 + Shew_3137 0.53 -0.8 3,732,815 + Shew_3137 0.76 -1.9 3,733,795 + Shew_3139 0.89 +1.3
Or see this region's nucleotide sequence