Strain Fitness in Shewanella loihica PV-4 around Shew_2916

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2914 and Shew_2915 overlap by 14 nucleotidesShew_2915 and Shew_2916 are separated by 38 nucleotidesShew_2916 and Shew_2917 are separated by 99 nucleotidesShew_2917 and Shew_2918 are separated by 12 nucleotides Shew_2914: Shew_2914 - outer membrane lipoprotein LolB (RefSeq), at 3,452,752 to 3,453,402 _2914 Shew_2915: Shew_2915 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (RefSeq), at 3,453,389 to 3,454,243 _2915 Shew_2916: Shew_2916 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,454,282 to 3,455,256 _2916 Shew_2917: Shew_2917 - hypothetical protein (RefSeq), at 3,455,356 to 3,455,763 _2917 Shew_2918: Shew_2918 - hypothetical protein (RefSeq), at 3,455,776 to 3,456,282 _2918 Position (kb) 3454 3455 3456Strain fitness (log2 ratio) -1 0 1at 3455.518 kb on + strand, within Shew_2917at 3456.012 kb on - strand, within Shew_2918

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
3,455,518 + Shew_2917 0.40 +1.2
3,456,012 - Shew_2918 0.47 -1.4

Or see this region's nucleotide sequence