Strain Fitness in Shewanella loihica PV-4 around Shew_2642

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2641 and Shew_2642 overlap by 49 nucleotidesShew_2642 and Shew_2643 are separated by 373 nucleotides Shew_2641: Shew_2641 - PTS system, glucose-like IIB subunint (RefSeq), at 3,116,519 to 3,117,991 _2641 Shew_2642: Shew_2642 - flavodoxin (RefSeq), at 3,117,943 to 3,118,407 _2642 Shew_2643: Shew_2643 - pseudouridylate synthase (RefSeq), at 3,118,781 to 3,119,602 _2643 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -1 0 1at 3116.945 kb on + strand, within Shew_2641at 3117.285 kb on - strand, within Shew_2641at 3117.459 kb on + strand, within Shew_2641at 3118.241 kb on - strand, within Shew_2642at 3119.245 kb on + strand, within Shew_2643

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,116,945 + Shew_2641 0.29 +0.9
3,117,285 - Shew_2641 0.52 -0.8
3,117,459 + Shew_2641 0.64 +0.3
3,118,241 - Shew_2642 0.64 -0.1
3,119,245 + Shew_2643 0.56 +0.5

Or see this region's nucleotide sequence