Strain Fitness in Shewanella loihica PV-4 around Shew_2286

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2285 and Shew_2286 overlap by 17 nucleotidesShew_2286 and Shew_2287 are separated by 86 nucleotides Shew_2285: Shew_2285 - UDP-glucose 4-epimerase (RefSeq), at 2,669,323 to 2,670,378 _2285 Shew_2286: Shew_2286 - SSS family solute/sodium (Na+) symporter (RefSeq), at 2,670,362 to 2,671,921 _2286 Shew_2287: Shew_2287 - galactokinase (RefSeq), at 2,672,008 to 2,673,189 _2287 Position (kb) 2670 2671 2672Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2669.365 kb on + strandat 2669.799 kb on + strand, within Shew_2285at 2669.848 kb on - strand, within Shew_2285at 2670.041 kb on - strand, within Shew_2285at 2670.522 kb on - strand, within Shew_2286at 2670.541 kb on - strand, within Shew_2286at 2671.554 kb on - strand, within Shew_2286at 2671.960 kb on + strandat 2672.071 kb on - strandat 2672.110 kb on + strandat 2672.301 kb on - strand, within Shew_2287at 2672.543 kb on - strand, within Shew_2287at 2672.821 kb on + strand, within Shew_2287at 2672.835 kb on + strand, within Shew_2287

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,669,365 + +0.4
2,669,799 + Shew_2285 0.45 +1.3
2,669,848 - Shew_2285 0.50 -7.6
2,670,041 - Shew_2285 0.68 +0.4
2,670,522 - Shew_2286 0.10 -0.6
2,670,541 - Shew_2286 0.11 -1.2
2,671,554 - Shew_2286 0.76 -0.2
2,671,960 + -0.5
2,672,071 - -4.4
2,672,110 + -0.3
2,672,301 - Shew_2287 0.25 +0.5
2,672,543 - Shew_2287 0.45 +0.5
2,672,821 + Shew_2287 0.69 -2.0
2,672,835 + Shew_2287 0.70 +1.1

Or see this region's nucleotide sequence