Strain Fitness in Shewanella loihica PV-4 around Shew_2082

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2081 and Shew_2082 overlap by 4 nucleotidesShew_2082 and Shew_2083 are separated by 25 nucleotidesShew_2083 and Shew_2084 are separated by 15 nucleotides Shew_2081: Shew_2081 - putative methyltransferase (RefSeq), at 2,407,722 to 2,408,453 _2081 Shew_2082: Shew_2082 - putative methyltransferase (RefSeq), at 2,408,450 to 2,409,442 _2082 Shew_2083: Shew_2083 - hypothetical protein (RefSeq), at 2,409,468 to 2,410,205 _2083 Shew_2084: Shew_2084 - gonadoliberin III-related protein (RefSeq), at 2,410,221 to 2,411,726 _2084 Position (kb) 2408 2409 2410Strain fitness (log2 ratio) -2 -1 0 1at 2407.487 kb on - strandat 2407.539 kb on - strandat 2407.654 kb on + strandat 2407.662 kb on - strandat 2408.634 kb on + strand, within Shew_2082at 2409.254 kb on + strand, within Shew_2082at 2409.791 kb on + strand, within Shew_2083at 2410.077 kb on - strand, within Shew_2083at 2410.343 kb on - strandat 2410.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,407,487 - +0.1
2,407,539 - -0.0
2,407,654 + -0.9
2,407,662 - +1.0
2,408,634 + Shew_2082 0.19 -2.4
2,409,254 + Shew_2082 0.81 -0.6
2,409,791 + Shew_2083 0.44 -0.2
2,410,077 - Shew_2083 0.83 +0.7
2,410,343 - +0.0
2,410,343 - +1.5

Or see this region's nucleotide sequence