Strain Fitness in Shewanella loihica PV-4 around Shew_2048

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2046 and Shew_2047 are separated by 9 nucleotidesShew_2047 and Shew_2048 are separated by 12 nucleotidesShew_2048 and Shew_2049 are separated by 308 nucleotides Shew_2046: Shew_2046 - phosphogluconate dehydratase (RefSeq), at 2,361,065 to 2,362,891 _2046 Shew_2047: Shew_2047 - 6-phosphogluconolactonase (RefSeq), at 2,362,901 to 2,363,599 _2047 Shew_2048: Shew_2048 - glucose-6-phosphate 1-dehydrogenase (RefSeq), at 2,363,612 to 2,365,084 _2048 Shew_2049: Shew_2049 - DNA-binding transcriptional regulator HexR (RefSeq), at 2,365,393 to 2,366,247 _2049 Position (kb) 2363 2364 2365 2366Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2365.437 kb on - strandat 2365.540 kb on + strand, within Shew_2049at 2365.644 kb on + strand, within Shew_2049at 2365.930 kb on + strand, within Shew_2049

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,365,437 - +5.5
2,365,540 + Shew_2049 0.17 +5.7
2,365,644 + Shew_2049 0.29 +6.4
2,365,930 + Shew_2049 0.63 +8.5

Or see this region's nucleotide sequence