Strain Fitness in Shewanella loihica PV-4 around Shew_1999

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1998 and Shew_1999 are separated by 62 nucleotidesShew_1999 and Shew_R0065 are separated by 395 nucleotidesShew_R0065 and Shew_R0066 are separated by 38 nucleotidesShew_R0066 and Shew_R0067 are separated by 35 nucleotidesShew_R0067 and Shew_2000 are separated by 233 nucleotides Shew_1998: Shew_1998 - protein of unknown function UPF0052 and CofD (RefSeq), at 2,309,364 to 2,310,275 _1998 Shew_1999: Shew_1999 - aromatic amino acid aminotransferase (RefSeq), at 2,310,338 to 2,311,531 _1999 Shew_R0065: Shew_R0065 - tRNA-Leu (RefSeq), at 2,311,927 to 2,312,013 _R0065 Shew_R0066: Shew_R0066 - tRNA-Cys (RefSeq), at 2,312,052 to 2,312,125 _R0066 Shew_R0067: Shew_R0067 - tRNA-Gly (RefSeq), at 2,312,161 to 2,312,236 _R0067 Shew_2000: Shew_2000 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,312,470 to 2,313,906 _2000 Position (kb) 2310 2311 2312Strain fitness (log2 ratio) -3 -2 -1 0 1at 2309.834 kb on - strand, within Shew_1998at 2310.407 kb on - strandat 2310.849 kb on + strand, within Shew_1999at 2311.513 kb on - strandat 2311.574 kb on + strandat 2311.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,309,834 - Shew_1998 0.52 +0.6
2,310,407 - -3.0
2,310,849 + Shew_1999 0.43 -2.7
2,311,513 - -1.3
2,311,574 + -0.3
2,311,574 + -0.1

Or see this region's nucleotide sequence