Strain Fitness in Shewanella loihica PV-4 around Shew_1968

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1967 and Shew_1968 are separated by 274 nucleotidesShew_1968 and Shew_1969 are separated by 244 nucleotidesShew_1969 and Shew_1970 overlap by 8 nucleotides Shew_1967: Shew_1967 - amidohydrolase (RefSeq), at 2,272,733 to 2,273,950 _1967 Shew_1968: Shew_1968 - beta-lactamase (RefSeq), at 2,274,225 to 2,275,367 _1968 Shew_1969: Shew_1969 - two component LuxR family transcriptional regulator (RefSeq), at 2,275,612 to 2,276,211 _1969 Shew_1970: Shew_1970 - histidine kinase (RefSeq), at 2,276,204 to 2,277,934 _1970 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -2 -1 0 1at 2273.836 kb on - strandat 2273.854 kb on - strandat 2274.625 kb on + strand, within Shew_1968at 2275.879 kb on + strand, within Shew_1969

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,273,836 - -2.3
2,273,854 - -0.1
2,274,625 + Shew_1968 0.35 -2.4
2,275,879 + Shew_1969 0.45 +0.0

Or see this region's nucleotide sequence