Strain Fitness in Shewanella loihica PV-4 around Shew_1945

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1943 and Shew_1944 are separated by 280 nucleotidesShew_1944 and nrdB overlap by 32 nucleotidesnrdB and Shew_1946 are separated by 59 nucleotides Shew_1943: Shew_1943 - hypothetical protein (RefSeq), at 2,244,949 to 2,245,449 _1943 Shew_1944: Shew_1944 - ferredoxin (RefSeq), at 2,245,730 to 2,246,110 _1944 Shew_1945: nrdB - ribonucleotide-diphosphate reductase subunit beta (RefSeq), at 2,246,079 to 2,247,209 nrdB Shew_1946: Shew_1946 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,247,269 to 2,249,557 _1946 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -1 0 1at 2245.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,245,430 - -1.1

Or see this region's nucleotide sequence