Strain Fitness in Shewanella loihica PV-4 around Shew_1906

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1905 and Shew_1906 are separated by 188 nucleotidesShew_1906 and Shew_1907 are separated by 280 nucleotidesShew_1907 and Shew_1908 are separated by 92 nucleotides Shew_1905: Shew_1905 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,200,934 to 2,202,991 _1905 Shew_1906: Shew_1906 - GCN5-related N-acetyltransferase (RefSeq), at 2,203,180 to 2,203,593 _1906 Shew_1907: Shew_1907 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 2,203,874 to 2,204,302 _1907 Shew_1908: Shew_1908 - hypothetical protein (RefSeq), at 2,204,395 to 2,205,021 _1908 Position (kb) 2203 2204Strain fitness (log2 ratio) -1 0 1 2 3 4at 2202.865 kb on + strandat 2202.873 kb on - strandat 2202.902 kb on + strandat 2203.231 kb on - strand, within Shew_1906at 2203.544 kb on + strand, within Shew_1906at 2203.552 kb on - strandat 2204.023 kb on + strand, within Shew_1907at 2204.211 kb on - strand, within Shew_1907at 2204.211 kb on - strand, within Shew_1907at 2204.211 kb on - strand, within Shew_1907at 2204.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,202,865 + -0.0
2,202,873 - +4.6
2,202,902 + +0.9
2,203,231 - Shew_1906 0.12 -1.4
2,203,544 + Shew_1906 0.88 +0.1
2,203,552 - +0.3
2,204,023 + Shew_1907 0.35 -0.4
2,204,211 - Shew_1907 0.79 +0.3
2,204,211 - Shew_1907 0.79 -0.3
2,204,211 - Shew_1907 0.79 +0.6
2,204,447 - +2.1

Or see this region's nucleotide sequence