Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1878 and Shew_1879 are separated by 38 nucleotides Shew_1879 and Shew_1880 are separated by 50 nucleotides Shew_1880 and Shew_1881 are separated by 192 nucleotides Shew_1881 and Shew_1882 are separated by 1 nucleotides
Shew_1878: Shew_1878 - 2-nitropropane dioxygenase, NPD (RefSeq), at 2,163,071 to 2,164,156
_1878
Shew_1879: Shew_1879 - GCN5-related N-acetyltransferase (RefSeq), at 2,164,195 to 2,164,740
_1879
Shew_1880: Shew_1880 - hypothetical protein (RefSeq), at 2,164,791 to 2,165,231
_1880
Shew_1881: Shew_1881 - hypothetical protein (RefSeq), at 2,165,424 to 2,165,825
_1881
Shew_1882: Shew_1882 - metal dependent phosphohydrolase (RefSeq), at 2,165,827 to 2,167,113
_1882
Position (kb) 2164
2165
2166 Strain fitness (log2 ratio) -1
0
1 at 2164.063 kb on + strand at 2164.063 kb on + strand at 2164.071 kb on - strand at 2164.733 kb on + strand at 2164.944 kb on - strand, within Shew_1880 at 2165.394 kb on + strand at 2165.573 kb on + strand, within Shew_1881 at 2166.006 kb on - strand, within Shew_1882
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,164,063 + -0.5 2,164,063 + +0.4 2,164,071 - -0.3 2,164,733 + +0.1 2,164,944 - Shew_1880 0.35 +0.4 2,165,394 + +0.0 2,165,573 + Shew_1881 0.37 -1.2 2,166,006 - Shew_1882 0.14 +0.4
Or see this region's nucleotide sequence