Strain Fitness in Shewanella loihica PV-4 around Shew_1870

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1869 and Shew_1870 are separated by 64 nucleotidesShew_1870 and Shew_1871 overlap by 4 nucleotidesShew_1871 and Shew_1872 are separated by 95 nucleotides Shew_1869: Shew_1869 - hypothetical protein (RefSeq), at 2,147,862 to 2,148,554 _1869 Shew_1870: Shew_1870 - LacI family transcription regulator (RefSeq), at 2,148,619 to 2,149,647 _1870 Shew_1871: Shew_1871 - DNA polymerase III, epsilon subunit (RefSeq), at 2,149,644 to 2,150,258 _1871 Shew_1872: Shew_1872 - elongation factor G (RefSeq), at 2,150,354 to 2,152,438 _1872 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2147.856 kb on - strandat 2147.858 kb on + strandat 2147.925 kb on + strandat 2147.982 kb on + strand, within Shew_1869at 2148.129 kb on - strand, within Shew_1869at 2148.422 kb on + strand, within Shew_1869at 2148.741 kb on - strand, within Shew_1870at 2148.811 kb on - strand, within Shew_1870at 2148.935 kb on - strand, within Shew_1870at 2148.950 kb on - strand, within Shew_1870at 2150.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,147,856 - -0.7
2,147,858 + +0.9
2,147,925 + -2.0
2,147,982 + Shew_1869 0.17 +0.4
2,148,129 - Shew_1869 0.39 +0.1
2,148,422 + Shew_1869 0.81 +0.0
2,148,741 - Shew_1870 0.12 -4.3
2,148,811 - Shew_1870 0.19 -6.0
2,148,935 - Shew_1870 0.31 -7.0
2,148,950 - Shew_1870 0.32 -5.9
2,150,213 + +0.2

Or see this region's nucleotide sequence