Strain Fitness in Shewanella loihica PV-4 around Shew_1577

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1575 and dcd are separated by 27 nucleotidesdcd and Shew_1577 overlap by 1 nucleotidesShew_1577 and Shew_1578 overlap by 4 nucleotides Shew_1575: Shew_1575 - uridine kinase (RefSeq), at 1,806,167 to 1,806,802 _1575 Shew_1576: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 1,806,830 to 1,807,414 dcd Shew_1577: Shew_1577 - aminotransferase, class IV (RefSeq), at 1,807,414 to 1,808,247 _1577 Shew_1578: Shew_1578 - aminodeoxychorismate lyase (RefSeq), at 1,808,244 to 1,809,251 _1578 Position (kb) 1807 1808 1809Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1806.779 kb on + strandat 1808.151 kb on + strand, within Shew_1577at 1808.726 kb on + strand, within Shew_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,806,779 + +0.3
1,808,151 + Shew_1577 0.88 -3.8
1,808,726 + Shew_1578 0.48 -1.0

Or see this region's nucleotide sequence