Strain Fitness in Shewanella loihica PV-4 around Shew_1427

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1426 and Shew_1427 are separated by 385 nucleotidesShew_1427 and Shew_1428 are separated by 28 nucleotidesShew_1428 and Shew_1429 are separated by 74 nucleotides Shew_1426: Shew_1426 - hypothetical protein (RefSeq), at 1,641,299 to 1,642,765 _1426 Shew_1427: Shew_1427 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 1,643,151 to 1,643,945 _1427 Shew_1428: Shew_1428 - fructokinase (RefSeq), at 1,643,974 to 1,644,864 _1428 Shew_1429: Shew_1429 - hypothetical protein (RefSeq), at 1,644,939 to 1,645,679 _1429 Position (kb) 1643 1644Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1642.481 kb on + strand, within Shew_1426at 1643.006 kb on - strandat 1643.031 kb on - strandat 1643.292 kb on + strand, within Shew_1427at 1643.691 kb on - strand, within Shew_1427at 1643.714 kb on - strand, within Shew_1427at 1643.875 kb on + strandat 1644.477 kb on + strand, within Shew_1428at 1644.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,642,481 + Shew_1426 0.81 -1.5
1,643,006 - +0.0
1,643,031 - -5.4
1,643,292 + Shew_1427 0.18 -3.8
1,643,691 - Shew_1427 0.68 -4.2
1,643,714 - Shew_1427 0.71 -3.3
1,643,875 + -2.0
1,644,477 + Shew_1428 0.56 -5.4
1,644,920 - -0.2

Or see this region's nucleotide sequence