Strain Fitness in Shewanella loihica PV-4 around Shew_1423

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1422 and Shew_1423 are separated by 17 nucleotidesShew_1423 and Shew_1424 are separated by 159 nucleotides Shew_1422: Shew_1422 - sulfate adenylyltransferase subunit 2 (RefSeq), at 1,636,162 to 1,637,067 _1422 Shew_1423: Shew_1423 - sulfate adenylyltransferase, large subunit (RefSeq), at 1,637,085 to 1,638,542 _1423 Shew_1424: Shew_1424 - TrkA domain-containing protein (RefSeq), at 1,638,702 to 1,640,429 _1424 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1636.157 kb on + strandat 1636.166 kb on - strandat 1636.790 kb on - strand, within Shew_1422at 1636.977 kb on + strandat 1637.098 kb on - strandat 1637.470 kb on + strand, within Shew_1423at 1637.845 kb on - strand, within Shew_1423at 1638.222 kb on - strand, within Shew_1423at 1638.857 kb on + strandat 1638.885 kb on - strand, within Shew_1424at 1639.123 kb on + strand, within Shew_1424at 1639.158 kb on - strand, within Shew_1424at 1639.299 kb on - strand, within Shew_1424at 1639.420 kb on - strand, within Shew_1424

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,636,157 + -6.7
1,636,166 - -4.3
1,636,790 - Shew_1422 0.69 -4.0
1,636,977 + -4.6
1,637,098 - -3.5
1,637,470 + Shew_1423 0.26 -0.5
1,637,845 - Shew_1423 0.52 -3.7
1,638,222 - Shew_1423 0.78 -3.7
1,638,857 + -8.1
1,638,885 - Shew_1424 0.11 -3.6
1,639,123 + Shew_1424 0.24 -2.0
1,639,158 - Shew_1424 0.26 -3.7
1,639,299 - Shew_1424 0.35 -3.8
1,639,420 - Shew_1424 0.42 -4.9

Or see this region's nucleotide sequence