Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0932 and Shew_0933 are separated by 39 nucleotides Shew_0933 and Shew_0934 are separated by 115 nucleotides Shew_0934 and Shew_0935 are separated by 379 nucleotides
Shew_0932: Shew_0932 - radical SAM domain-containing protein (RefSeq), at 1,065,921 to 1,067,009
_0932
Shew_0933: Shew_0933 - methyltransferase type 11 (RefSeq), at 1,067,049 to 1,067,720
_0933
Shew_0934: Shew_0934 - TPR repeat-containing protein (RefSeq), at 1,067,836 to 1,068,750
_0934
Shew_0935: Shew_0935 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,069,130 to 1,072,729
_0935
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1067.103 kb on + strand at 1067.349 kb on + strand, within Shew_0933 at 1067.349 kb on + strand, within Shew_0933 at 1067.887 kb on - strand at 1067.987 kb on - strand, within Shew_0934 at 1068.174 kb on + strand, within Shew_0934 at 1068.293 kb on + strand, within Shew_0934 at 1068.301 kb on - strand, within Shew_0934 at 1068.574 kb on - strand, within Shew_0934 at 1068.876 kb on - strand at 1068.954 kb on - strand at 1069.015 kb on + strand at 1069.024 kb on + strand at 1069.429 kb on + strand at 1069.606 kb on + strand, within Shew_0935 at 1069.672 kb on - strand, within Shew_0935 at 1069.702 kb on - strand, within Shew_0935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,067,103 + +0.0 1,067,349 + Shew_0933 0.45 +0.8 1,067,349 + Shew_0933 0.45 -1.4 1,067,887 - -0.7 1,067,987 - Shew_0934 0.17 +0.1 1,068,174 + Shew_0934 0.37 -0.4 1,068,293 + Shew_0934 0.50 -1.1 1,068,301 - Shew_0934 0.51 -0.7 1,068,574 - Shew_0934 0.81 -1.1 1,068,876 - -3.9 1,068,954 - -0.0 1,069,015 + -0.8 1,069,024 + -0.1 1,069,429 + +0.7 1,069,606 + Shew_0935 0.13 -0.1 1,069,672 - Shew_0935 0.15 +0.6 1,069,702 - Shew_0935 0.16 -0.8
Or see this region's nucleotide sequence