Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0351 and Shew_0352 are separated by 117 nucleotides Shew_0352 and Shew_0353 are separated by 2 nucleotides Shew_0353 and Shew_0354 are separated by 54 nucleotides Shew_0354 and Shew_0355 are separated by 10 nucleotides
Shew_0351: Shew_0351 - TPR repeat-containing protein (RefSeq), at 400,254 to 400,946
_0351
Shew_0352: Shew_0352 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 401,064 to 401,711
_0352
Shew_0353: Shew_0353 - polysulphide reductase, NrfD (RefSeq), at 401,714 to 402,661
_0353
Shew_0354: Shew_0354 - NosL family protein (RefSeq), at 402,716 to 403,204
_0354
Shew_0355: Shew_0355 - periplasmic copper-binding (RefSeq), at 403,215 to 404,573
_0355
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.855 kb on - strand, within Shew_0351 at 400.900 kb on + strand at 400.903 kb on - strand at 400.905 kb on + strand at 400.941 kb on + strand at 401.073 kb on + strand at 401.133 kb on - strand, within Shew_0352 at 401.237 kb on - strand, within Shew_0352 at 401.538 kb on - strand, within Shew_0352 at 401.550 kb on + strand, within Shew_0352 at 401.653 kb on - strand at 401.686 kb on - strand at 401.880 kb on - strand, within Shew_0353 at 401.943 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.632 kb on - strand at 402.641 kb on + strand at 402.702 kb on + strand at 402.780 kb on + strand, within Shew_0354 at 403.124 kb on + strand, within Shew_0354 at 403.130 kb on - strand, within Shew_0354 at 403.149 kb on - strand, within Shew_0354 at 403.173 kb on + strand at 403.187 kb on - strand at 403.288 kb on + strand at 403.432 kb on - strand, within Shew_0355 at 403.456 kb on + strand, within Shew_0355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 400,855 - Shew_0351 0.87 +0.1 400,900 + +0.1 400,903 - -2.5 400,905 + -0.1 400,941 + +1.9 401,073 + -2.1 401,133 - Shew_0352 0.11 +0.3 401,237 - Shew_0352 0.27 -0.1 401,538 - Shew_0352 0.73 -1.4 401,550 + Shew_0352 0.75 +0.3 401,653 - +0.1 401,686 - +0.1 401,880 - Shew_0353 0.18 -0.1 401,943 - Shew_0353 0.24 +0.3 402,129 - Shew_0353 0.44 +0.5 402,129 - Shew_0353 0.44 +1.4 402,632 - -0.4 402,641 + +0.0 402,702 + -0.1 402,780 + Shew_0354 0.13 -0.3 403,124 + Shew_0354 0.83 -1.6 403,130 - Shew_0354 0.85 +0.2 403,149 - Shew_0354 0.89 -0.1 403,173 + -0.3 403,187 - -0.8 403,288 + -0.8 403,432 - Shew_0355 0.16 +0.1 403,456 + Shew_0355 0.18 +0.6
Or see this region's nucleotide sequence