Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyaA and Shew_0320 are separated by 7 nucleotides Shew_0320 and Shew_0321 are separated by 489 nucleotides Shew_0321 and Shew_0322 are separated by 5 nucleotides
Shew_0319: cyaA - adenylate cyclase (RefSeq), at 364,802 to 367,222
cyaA
Shew_0320: Shew_0320 - frataxin family protein (RefSeq), at 367,230 to 367,604
_0320
Shew_0321: Shew_0321 - hypothetical protein (RefSeq), at 368,094 to 368,261
_0321
Shew_0322: Shew_0322 - diaminopimelate decarboxylase (RefSeq), at 368,267 to 369,511
_0322
Position (kb) 367
368 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 366.356 kb on - strand, within cyaA at 366.595 kb on + strand, within cyaA at 366.603 kb on - strand, within cyaA at 367.053 kb on + strand at 367.262 kb on + strand at 367.262 kb on + strand at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.313 kb on - strand, within Shew_0320 at 367.413 kb on - strand, within Shew_0320 at 368.416 kb on - strand, within Shew_0322 at 368.423 kb on + strand, within Shew_0322 at 368.449 kb on - strand, within Shew_0322 at 368.451 kb on + strand, within Shew_0322 at 368.459 kb on - strand, within Shew_0322 at 368.459 kb on - strand, within Shew_0322
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 366,356 - cyaA Shew_0319 0.64 -0.5 366,595 + cyaA Shew_0319 0.74 +0.1 366,603 - cyaA Shew_0319 0.74 -1.1 367,053 + +0.1 367,262 + -6.0 367,262 + -3.8 367,270 - Shew_0320 0.11 -3.6 367,270 - Shew_0320 0.11 -2.1 367,270 - Shew_0320 0.11 -7.4 367,313 - Shew_0320 0.22 -5.6 367,413 - Shew_0320 0.49 -5.4 368,416 - Shew_0322 0.12 -3.3 368,423 + Shew_0322 0.13 -6.3 368,449 - Shew_0322 0.15 -8.8 368,451 + Shew_0322 0.15 -6.7 368,459 - Shew_0322 0.15 -2.1 368,459 - Shew_0322 0.15 -2.4
Or see this region's nucleotide sequence