Strain Fitness in Shewanella loihica PV-4 around Shew_0232

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0231 and Shew_0232 are separated by 192 nucleotidesShew_0232 and Shew_0233 are separated by 130 nucleotides Shew_0231: Shew_0231 - hypothetical protein (RefSeq), at 245,669 to 246,940 _0231 Shew_0232: Shew_0232 - hypothetical protein (RefSeq), at 247,133 to 247,528 _0232 Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001 _0233 Position (kb) 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 246.334 kb on - strand, within Shew_0231at 246.391 kb on - strand, within Shew_0231at 246.690 kb on - strand, within Shew_0231at 247.136 kb on - strandat 247.235 kb on - strand, within Shew_0232at 247.264 kb on - strand, within Shew_0232at 247.415 kb on - strand, within Shew_0232at 247.415 kb on - strand, within Shew_0232at 247.420 kb on - strand, within Shew_0232at 247.587 kb on - strandat 247.685 kb on - strandat 247.745 kb on + strandat 248.066 kb on + strand, within Shew_0233at 248.076 kb on - strand, within Shew_0233at 248.083 kb on + strand, within Shew_0233at 248.100 kb on - strand, within Shew_0233at 248.296 kb on - strand, within Shew_0233at 248.504 kb on + strand, within Shew_0233at 248.504 kb on + strand, within Shew_0233

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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246,334 - Shew_0231 0.52 +0.8
246,391 - Shew_0231 0.57 +1.4
246,690 - Shew_0231 0.80 +1.1
247,136 - +0.1
247,235 - Shew_0232 0.26 +1.4
247,264 - Shew_0232 0.33 -2.2
247,415 - Shew_0232 0.71 -0.8
247,415 - Shew_0232 0.71 +2.8
247,420 - Shew_0232 0.72 +0.2
247,587 - -0.4
247,685 - +0.6
247,745 + +0.1
248,066 + Shew_0233 0.17 +1.6
248,076 - Shew_0233 0.18 +1.0
248,083 + Shew_0233 0.18 +0.4
248,100 - Shew_0233 0.19 -2.0
248,296 - Shew_0233 0.27 +0.1
248,504 + Shew_0233 0.36 -3.3
248,504 + Shew_0233 0.36 -0.6

Or see this region's nucleotide sequence