Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0121 and Shew_0122 are separated by 15 nucleotides Shew_0122 and Shew_0123 overlap by 4 nucleotides Shew_0123 and Shew_0124 are separated by 1 nucleotides
Shew_0121: Shew_0121 - hypothetical protein (RefSeq), at 131,798 to 131,974
_0121
Shew_0122: Shew_0122 - cytochrome c oxidase, subunit III (RefSeq), at 131,990 to 132,865
_0122
Shew_0123: Shew_0123 - cytochrome C oxidase assembly protein (RefSeq), at 132,862 to 133,431
_0123
Shew_0124: Shew_0124 - cytochrome-c oxidase (RefSeq), at 133,433 to 135,043
_0124
Position (kb) 132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.898 kb on + strand, within Shew_0121 at 131.949 kb on - strand, within Shew_0121 at 132.204 kb on + strand, within Shew_0122 at 132.244 kb on - strand, within Shew_0122 at 132.280 kb on + strand, within Shew_0122 at 132.343 kb on - strand, within Shew_0122 at 132.397 kb on + strand, within Shew_0122 at 132.410 kb on - strand, within Shew_0122 at 132.414 kb on + strand, within Shew_0122 at 132.422 kb on - strand, within Shew_0122 at 132.489 kb on - strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.521 kb on + strand, within Shew_0122 at 132.545 kb on + strand, within Shew_0122 at 132.639 kb on - strand, within Shew_0122 at 132.669 kb on + strand, within Shew_0122 at 132.680 kb on + strand, within Shew_0122 at 132.737 kb on + strand, within Shew_0122 at 132.815 kb on - strand at 132.845 kb on - strand at 132.929 kb on - strand, within Shew_0123 at 132.949 kb on - strand, within Shew_0123 at 133.068 kb on + strand, within Shew_0123 at 133.068 kb on + strand, within Shew_0123 at 133.076 kb on - strand, within Shew_0123 at 133.093 kb on - strand, within Shew_0123 at 133.206 kb on - strand, within Shew_0123 at 133.391 kb on - strand at 133.435 kb on + strand at 133.463 kb on + strand at 133.786 kb on + strand, within Shew_0124 at 133.958 kb on + strand, within Shew_0124 at 133.977 kb on - strand, within Shew_0124 at 134.025 kb on - strand, within Shew_0124 at 134.117 kb on - strand, within Shew_0124 at 134.408 kb on - strand, within Shew_0124
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 131,898 + Shew_0121 0.56 -2.2 131,949 - Shew_0121 0.85 +2.4 132,204 + Shew_0122 0.24 -0.3 132,244 - Shew_0122 0.29 -0.2 132,280 + Shew_0122 0.33 -0.1 132,343 - Shew_0122 0.40 -1.7 132,397 + Shew_0122 0.46 -0.1 132,410 - Shew_0122 0.48 +0.1 132,414 + Shew_0122 0.48 -1.0 132,422 - Shew_0122 0.49 +0.4 132,489 - Shew_0122 0.57 -0.1 132,521 + Shew_0122 0.61 -0.6 132,521 + Shew_0122 0.61 -0.2 132,545 + Shew_0122 0.63 -1.5 132,639 - Shew_0122 0.74 +0.3 132,669 + Shew_0122 0.78 +0.2 132,680 + Shew_0122 0.79 +0.3 132,737 + Shew_0122 0.85 +0.1 132,815 - -0.3 132,845 - +0.5 132,929 - Shew_0123 0.12 +0.2 132,949 - Shew_0123 0.15 +0.0 133,068 + Shew_0123 0.36 -0.8 133,068 + Shew_0123 0.36 +0.5 133,076 - Shew_0123 0.38 -0.2 133,093 - Shew_0123 0.41 +0.5 133,206 - Shew_0123 0.60 +0.7 133,391 - +0.1 133,435 + -1.0 133,463 + -3.0 133,786 + Shew_0124 0.22 +0.5 133,958 + Shew_0124 0.33 +1.5 133,977 - Shew_0124 0.34 -1.1 134,025 - Shew_0124 0.37 -0.0 134,117 - Shew_0124 0.42 +0.4 134,408 - Shew_0124 0.61 -0.1
Or see this region's nucleotide sequence