Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0099 and Shew_0100 are separated by 21 nucleotides Shew_0100 and Shew_0101 are separated by 225 nucleotides Shew_0101 and Shew_0102 are separated by 101 nucleotides Shew_0102 and Shew_0103 are separated by 206 nucleotides
Shew_0099: Shew_0099 - pseudouridine synthase Rlu family protein (RefSeq), at 110,231 to 110,905
_0099
Shew_0100: Shew_0100 - hypothetical protein (RefSeq), at 110,927 to 111,094
_0100
Shew_0101: Shew_0101 - endoribonuclease L-PSP (RefSeq), at 111,320 to 111,721
_0101
Shew_0102: Shew_0102 - hypothetical protein (RefSeq), at 111,823 to 111,978
_0102
Shew_0103: Shew_0103 - sodium/glutamate symporter (RefSeq), at 112,185 to 113,408
_0103
Position (kb) 111
112 Strain fitness (log2 ratio) -2
-1
0
1 at 111.095 kb on - strand at 111.136 kb on + strand at 111.166 kb on - strand at 111.225 kb on + strand at 111.413 kb on - strand, within Shew_0101 at 111.429 kb on + strand, within Shew_0101 at 111.450 kb on - strand, within Shew_0101 at 111.493 kb on + strand, within Shew_0101 at 111.745 kb on + strand at 111.879 kb on + strand, within Shew_0102 at 112.067 kb on - strand at 112.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 111,095 - +0.4 111,136 + -0.9 111,166 - -0.3 111,225 + +0.3 111,413 - Shew_0101 0.23 -0.6 111,429 + Shew_0101 0.27 -0.3 111,450 - Shew_0101 0.32 +1.3 111,493 + Shew_0101 0.43 +0.7 111,745 + -1.8 111,879 + Shew_0102 0.36 -2.1 112,067 - +0.5 112,101 - +0.3
Or see this region's nucleotide sequence