Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0056 and Shew_0057 are separated by 10 nucleotides Shew_0057 and Shew_0058 are separated by 167 nucleotides Shew_0058 and Shew_0059 are separated by 51 nucleotides
Shew_0056: Shew_0056 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 67,100 to 68,776
_0056
Shew_0057: Shew_0057 - cytoplasmic chaperone TorD family protein (RefSeq), at 68,787 to 69,452
_0057
Shew_0058: Shew_0058 - twin-arginine translocation pathway signal (RefSeq), at 69,620 to 69,820
_0058
Shew_0059: Shew_0059 - molybdopterin oxidoreductase (RefSeq), at 69,872 to 72,721
_0059
Position (kb) 69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 68.688 kb on + strand at 68.825 kb on + strand at 68.825 kb on + strand at 68.991 kb on - strand, within Shew_0057 at 69.146 kb on + strand, within Shew_0057 at 69.329 kb on + strand, within Shew_0057 at 69.472 kb on - strand at 69.506 kb on + strand at 69.638 kb on + strand at 69.671 kb on + strand, within Shew_0058 at 69.671 kb on + strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.681 kb on + strand, within Shew_0058 at 69.757 kb on + strand, within Shew_0058 at 69.855 kb on + strand at 69.863 kb on - strand at 69.934 kb on - strand at 70.083 kb on + strand at 70.367 kb on - strand, within Shew_0059 at 70.381 kb on + strand, within Shew_0059 at 70.419 kb on - strand, within Shew_0059 at 70.601 kb on + strand, within Shew_0059
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 68,688 + -2.6 68,825 + +0.5 68,825 + +1.0 68,991 - Shew_0057 0.31 -0.4 69,146 + Shew_0057 0.54 -0.9 69,329 + Shew_0057 0.81 -0.9 69,472 - -1.4 69,506 + -2.6 69,638 + -0.6 69,671 + Shew_0058 0.25 -0.8 69,671 + Shew_0058 0.25 -3.3 69,679 - Shew_0058 0.29 +0.9 69,679 - Shew_0058 0.29 -0.1 69,679 - Shew_0058 0.29 -0.9 69,679 - Shew_0058 0.29 -1.9 69,681 + Shew_0058 0.30 -1.6 69,757 + Shew_0058 0.68 -0.5 69,855 + -0.4 69,863 - -0.4 69,934 - -1.0 70,083 + -1.0 70,367 - Shew_0059 0.17 +0.0 70,381 + Shew_0059 0.18 -0.3 70,419 - Shew_0059 0.19 -0.7 70,601 + Shew_0059 0.26 -0.0
Or see this region's nucleotide sequence