Strain Fitness in Shewanella loihica PV-4 around Shew_0009

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0007 and Shew_0008 overlap by 4 nucleotidesShew_0008 and glyS are separated by 98 nucleotidesglyS and glyQ are separated by 12 nucleotides Shew_0007: Shew_0007 - urea amidolyase related protein (RefSeq), at 7,793 to 8,725 _0007 Shew_0008: Shew_0008 - allophanate hydrolase subunit 1 (RefSeq), at 8,722 to 9,408 _0008 Shew_0009: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 9,507 to 11,576 glyS Shew_0010: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 11,589 to 12,494 glyQ Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 8.530 kb on - strand, within Shew_0007at 8.615 kb on - strand, within Shew_0007at 8.741 kb on + strandat 8.773 kb on - strandat 8.783 kb on - strandat 8.950 kb on - strand, within Shew_0008at 9.065 kb on - strand, within Shew_0008at 9.067 kb on + strand, within Shew_0008at 9.106 kb on + strand, within Shew_0008at 9.179 kb on + strand, within Shew_0008at 9.179 kb on + strand, within Shew_0008at 9.179 kb on + strand, within Shew_0008at 9.187 kb on - strand, within Shew_0008at 9.285 kb on + strand, within Shew_0008at 9.292 kb on - strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.299 kb on + strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008at 9.307 kb on - strand, within Shew_0008

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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8,530 - Shew_0007 0.79 +0.9
8,615 - Shew_0007 0.88 -0.2
8,741 + -1.8
8,773 - +0.2
8,783 - -0.4
8,950 - Shew_0008 0.33 -0.4
9,065 - Shew_0008 0.50 -1.7
9,067 + Shew_0008 0.50 -0.4
9,106 + Shew_0008 0.56 +0.6
9,179 + Shew_0008 0.67 +1.1
9,179 + Shew_0008 0.67 +0.5
9,179 + Shew_0008 0.67 -0.1
9,187 - Shew_0008 0.68 -0.5
9,285 + Shew_0008 0.82 -0.7
9,292 - Shew_0008 0.83 -0.6
9,299 + Shew_0008 0.84 +0.7
9,299 + Shew_0008 0.84 -0.1
9,299 + Shew_0008 0.84 -1.9
9,299 + Shew_0008 0.84 +0.0
9,299 + Shew_0008 0.84 -0.9
9,299 + Shew_0008 0.84 -0.6
9,299 + Shew_0008 0.84 -0.5
9,299 + Shew_0008 0.84 -0.4
9,299 + Shew_0008 0.84 +0.7
9,299 + Shew_0008 0.84 -1.3
9,299 + Shew_0008 0.84 +0.4
9,299 + Shew_0008 0.84 -1.1
9,299 + Shew_0008 0.84 +0.3
9,299 + Shew_0008 0.84 +1.3
9,299 + Shew_0008 0.84 +0.6
9,307 - Shew_0008 0.85 -0.1
9,307 - Shew_0008 0.85 +0.5
9,307 - Shew_0008 0.85 -0.0
9,307 - Shew_0008 0.85 +0.1
9,307 - Shew_0008 0.85 +0.0
9,307 - Shew_0008 0.85 -1.6
9,307 - Shew_0008 0.85 -0.1
9,307 - Shew_0008 0.85 +0.1
9,307 - Shew_0008 0.85 -0.7

Or see this region's nucleotide sequence