Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_955 and HP15_956 are separated by 152 nucleotides HP15_956 and HP15_957 are separated by 130 nucleotides HP15_957 and HP15_958 are separated by 26 nucleotides
HP15_955: HP15_955 - short chain fatty acid transporter, at 971,905 to 972,645
_955
HP15_956: HP15_956 - short chain fatty acid transporter, at 972,798 to 973,187
_956
HP15_957: HP15_957 - GDSL-like lipase/acylhydrolase domain protein, at 973,318 to 974,031
_957
HP15_958: HP15_958 - small multidrug resistance protein, at 974,058 to 974,390
_958
Position (kb) 972
973
974 Strain fitness (log2 ratio) -1
0
1
2 at 971.800 kb on + strand at 971.812 kb on + strand at 971.877 kb on - strand at 971.914 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.942 kb on + strand at 971.955 kb on + strand at 971.980 kb on - strand, within HP15_955 at 971.992 kb on - strand, within HP15_955 at 972.017 kb on + strand, within HP15_955 at 972.025 kb on - strand, within HP15_955 at 972.065 kb on + strand, within HP15_955 at 972.073 kb on - strand, within HP15_955 at 972.207 kb on - strand, within HP15_955 at 972.283 kb on - strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.323 kb on + strand, within HP15_955 at 972.341 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.417 kb on + strand, within HP15_955 at 972.501 kb on + strand, within HP15_955 at 972.507 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.539 kb on - strand, within HP15_955 at 972.571 kb on + strand, within HP15_955 at 972.639 kb on - strand at 972.736 kb on - strand at 972.741 kb on - strand at 972.820 kb on + strand at 972.830 kb on + strand at 972.949 kb on + strand, within HP15_956 at 972.972 kb on + strand, within HP15_956 at 972.995 kb on - strand, within HP15_956 at 973.001 kb on - strand, within HP15_956 at 973.060 kb on + strand, within HP15_956 at 973.135 kb on - strand, within HP15_956 at 973.149 kb on + strand at 973.203 kb on + strand at 973.289 kb on - strand at 973.435 kb on - strand, within HP15_957 at 973.486 kb on - strand, within HP15_957 at 973.543 kb on - strand, within HP15_957 at 973.603 kb on + strand, within HP15_957 at 973.613 kb on + strand, within HP15_957 at 973.676 kb on - strand, within HP15_957 at 973.777 kb on + strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.785 kb on - strand, within HP15_957 at 973.826 kb on + strand, within HP15_957 at 973.846 kb on + strand, within HP15_957 at 973.882 kb on - strand, within HP15_957 at 973.950 kb on + strand, within HP15_957 at 973.977 kb on + strand at 973.996 kb on + strand at 973.996 kb on + strand at 974.001 kb on + strand at 974.004 kb on - strand at 974.093 kb on + strand, within HP15_958 at 974.117 kb on - strand, within HP15_958 at 974.139 kb on + strand, within HP15_958
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 971,800 + -1.0 971,812 + +1.9 971,877 - +1.7 971,914 + +1.2 971,922 - +1.4 971,922 - +0.8 971,942 + +1.2 971,955 + +0.8 971,980 - HP15_955 0.10 -0.0 971,992 - HP15_955 0.12 +0.2 972,017 + HP15_955 0.15 +1.6 972,025 - HP15_955 0.16 -0.9 972,065 + HP15_955 0.22 -0.7 972,073 - HP15_955 0.23 +0.4 972,207 - HP15_955 0.41 -0.4 972,283 - HP15_955 0.51 +0.7 972,323 + HP15_955 0.56 +0.1 972,323 + HP15_955 0.56 -0.2 972,341 + HP15_955 0.59 +0.2 972,417 + HP15_955 0.69 +0.5 972,417 + HP15_955 0.69 +1.5 972,501 + HP15_955 0.80 -1.2 972,507 - HP15_955 0.81 -0.4 972,539 - HP15_955 0.86 +0.1 972,539 - HP15_955 0.86 -0.7 972,571 + HP15_955 0.90 +0.2 972,639 - -0.1 972,736 - +2.0 972,741 - +1.6 972,820 + +2.0 972,830 + -0.5 972,949 + HP15_956 0.39 -0.0 972,972 + HP15_956 0.45 -0.1 972,995 - HP15_956 0.51 +0.2 973,001 - HP15_956 0.52 -0.4 973,060 + HP15_956 0.67 -1.6 973,135 - HP15_956 0.86 -0.4 973,149 + +2.1 973,203 + -0.0 973,289 - -0.5 973,435 - HP15_957 0.16 +0.2 973,486 - HP15_957 0.24 +1.6 973,543 - HP15_957 0.32 +0.2 973,603 + HP15_957 0.40 +1.3 973,613 + HP15_957 0.41 +1.5 973,676 - HP15_957 0.50 -0.5 973,777 + HP15_957 0.64 +0.8 973,785 - HP15_957 0.65 -0.1 973,785 - HP15_957 0.65 -0.1 973,785 - HP15_957 0.65 -0.5 973,826 + HP15_957 0.71 +1.7 973,846 + HP15_957 0.74 +0.1 973,882 - HP15_957 0.79 +2.0 973,950 + HP15_957 0.89 -0.5 973,977 + -0.8 973,996 + -0.6 973,996 + -0.2 974,001 + -0.0 974,004 - +1.5 974,093 + HP15_958 0.11 -0.6 974,117 - HP15_958 0.18 +1.7 974,139 + HP15_958 0.24 +2.3
Or see this region's nucleotide sequence