Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_826 and HP15_827 are separated by 102 nucleotides HP15_827 and HP15_828 are separated by 178 nucleotides HP15_828 and HP15_829 are separated by 48 nucleotides
HP15_826: HP15_826 - lipoprotein, at 843,763 to 844,641
_826
HP15_827: HP15_827 - conserved hypothetical protein, membrane, at 844,744 to 845,025
_827
HP15_828: HP15_828 - conserved hypothetical protein, at 845,204 to 846,595
_828
HP15_829: HP15_829 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 846,644 to 848,146
_829
Position (kb)
845
846
847 Strain fitness (log2 ratio)
-1
0
1
2 at 844.209 kb on + strand, within HP15_826 at 844.234 kb on + strand, within HP15_826 at 844.234 kb on + strand, within HP15_826 at 844.242 kb on - strand, within HP15_826 at 844.265 kb on - strand, within HP15_826 at 844.411 kb on + strand, within HP15_826 at 844.465 kb on - strand, within HP15_826 at 845.126 kb on + strand at 845.134 kb on - strand at 845.134 kb on - strand at 845.144 kb on - strand at 845.145 kb on - strand at 845.220 kb on + strand at 845.324 kb on - strand at 845.581 kb on + strand, within HP15_828 at 845.589 kb on - strand, within HP15_828 at 845.589 kb on - strand, within HP15_828 at 845.645 kb on - strand, within HP15_828 at 845.694 kb on + strand, within HP15_828 at 845.814 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.924 kb on + strand, within HP15_828 at 845.932 kb on - strand, within HP15_828 at 845.956 kb on - strand, within HP15_828 at 846.099 kb on - strand, within HP15_828 at 846.157 kb on - strand, within HP15_828 at 846.172 kb on + strand, within HP15_828 at 846.426 kb on - strand, within HP15_828 at 846.475 kb on + strand at 846.493 kb on - strand at 846.563 kb on - strand at 846.592 kb on + strand at 846.658 kb on + strand at 847.345 kb on + strand, within HP15_829 at 847.502 kb on - strand, within HP15_829 at 847.536 kb on + strand, within HP15_829
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 844,209 + HP15_826 0.51 +1.7 844,234 + HP15_826 0.54 +1.7 844,234 + HP15_826 0.54 +1.7 844,242 - HP15_826 0.54 -0.6 844,265 - HP15_826 0.57 -0.1 844,411 + HP15_826 0.74 -0.5 844,465 - HP15_826 0.80 -0.5 845,126 + +0.0 845,134 - -0.1 845,134 - -0.6 845,144 - +0.1 845,145 - +1.1 845,220 + -0.5 845,324 - +1.6 845,581 + HP15_828 0.27 +2.1 845,589 - HP15_828 0.28 +2.0 845,589 - HP15_828 0.28 +1.7 845,645 - HP15_828 0.32 +1.6 845,694 + HP15_828 0.35 +0.0 845,814 + HP15_828 0.44 +1.1 845,924 + HP15_828 0.52 +0.1 845,924 + HP15_828 0.52 -1.4 845,932 - HP15_828 0.52 +1.7 845,956 - HP15_828 0.54 -0.2 846,099 - HP15_828 0.64 +0.1 846,157 - HP15_828 0.68 -1.0 846,172 + HP15_828 0.70 -0.5 846,426 - HP15_828 0.88 +1.7 846,475 + +0.2 846,493 - +1.0 846,563 - +1.3 846,592 + -1.2 846,658 + -0.5 847,345 + HP15_829 0.47 -0.0 847,502 - HP15_829 0.57 -1.2 847,536 + HP15_829 0.59 -1.2
Or see this region's nucleotide sequence