Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_731 and HP15_732 are separated by 40 nucleotides HP15_732 and HP15_733 are separated by 3 nucleotides HP15_733 and HP15_734 are separated by 77 nucleotides HP15_734 and HP15_735 overlap by 4 nucleotides
HP15_731: HP15_731 - conserved hypothetical protein, at 741,661 to 742,668
_731
HP15_732: HP15_732 - septum formation topological specificity factor MinE, at 742,709 to 742,960
_732
HP15_733: HP15_733 - cell division inhibitor MinD, at 742,964 to 743,776
_733
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
Position (kb) 742
743
744 Strain fitness (log2 ratio) -1
0
1 at 742.009 kb on - strand, within HP15_731 at 742.019 kb on - strand, within HP15_731 at 742.071 kb on + strand, within HP15_731 at 742.190 kb on + strand, within HP15_731 at 742.203 kb on - strand, within HP15_731 at 742.236 kb on + strand, within HP15_731 at 742.285 kb on + strand, within HP15_731 at 742.331 kb on - strand, within HP15_731 at 742.336 kb on + strand, within HP15_731 at 742.443 kb on + strand, within HP15_731 at 742.979 kb on - strand at 743.123 kb on + strand, within HP15_733 at 743.227 kb on + strand, within HP15_733 at 743.363 kb on + strand, within HP15_733 at 743.381 kb on - strand, within HP15_733 at 743.522 kb on + strand, within HP15_733 at 743.600 kb on + strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.608 kb on - strand, within HP15_733 at 743.645 kb on + strand, within HP15_733 at 743.692 kb on + strand, within HP15_733 at 743.858 kb on + strand at 744.043 kb on + strand, within HP15_734 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 742,009 - HP15_731 0.35 -1.6 742,019 - HP15_731 0.36 -1.3 742,071 + HP15_731 0.41 -0.0 742,190 + HP15_731 0.52 -0.6 742,203 - HP15_731 0.54 -1.3 742,236 + HP15_731 0.57 -0.2 742,285 + HP15_731 0.62 +0.2 742,331 - HP15_731 0.66 -0.5 742,336 + HP15_731 0.67 +1.2 742,443 + HP15_731 0.78 -0.8 742,979 - +0.1 743,123 + HP15_733 0.20 +1.5 743,227 + HP15_733 0.32 -1.1 743,363 + HP15_733 0.49 -1.4 743,381 - HP15_733 0.51 -0.4 743,522 + HP15_733 0.69 -0.4 743,600 + HP15_733 0.78 -0.6 743,608 - HP15_733 0.79 +1.2 743,608 - HP15_733 0.79 -0.8 743,608 - HP15_733 0.79 -0.7 743,645 + HP15_733 0.84 -0.7 743,692 + HP15_733 0.90 -0.9 743,858 + -0.8 744,043 + HP15_734 0.25 -0.8 744,418 + HP15_734 0.74 +1.4 744,424 - HP15_734 0.75 -0.5 744,546 - -0.5 744,546 - +0.7 744,650 + -0.4
Or see this region's nucleotide sequence