Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_687 and HP15_688 are separated by 410 nucleotides HP15_688 and HP15_689 are separated by 96 nucleotides HP15_689 and HP15_690 overlap by 8 nucleotides HP15_690 and HP15_691 overlap by 20 nucleotides HP15_691 and HP15_692 are separated by 3 nucleotides
HP15_687: HP15_687 - protein containing domain of unknown function DUF1994, at 703,937 to 704,788
_687
HP15_688: HP15_688 - conserved hypothetical protein, at 705,199 to 705,444
_688
HP15_689: HP15_689 - carbon storage regulator, at 705,541 to 705,729
_689
HP15_690: HP15_690 - hypothetical protein, at 705,722 to 706,051
_690
HP15_691: HP15_691 - phage protein-like protein, at 706,032 to 706,253
_691
HP15_692: HP15_692 - phage protein, at 706,257 to 706,877
_692
Position (kb) 705
706 Strain fitness (log2 ratio) -1
0
1
2 at 704.635 kb on - strand, within HP15_687 at 704.638 kb on + strand, within HP15_687 at 704.708 kb on - strand at 705.137 kb on - strand at 705.159 kb on - strand at 705.362 kb on - strand, within HP15_688 at 705.823 kb on - strand, within HP15_690 at 705.823 kb on - strand, within HP15_690 at 705.848 kb on - strand, within HP15_690 at 705.907 kb on - strand, within HP15_690 at 706.144 kb on - strand, within HP15_691 at 706.167 kb on - strand, within HP15_691 at 706.507 kb on - strand, within HP15_692 at 706.658 kb on - strand, within HP15_692 at 706.725 kb on - strand, within HP15_692
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 704,635 - HP15_687 0.82 +1.8 704,638 + HP15_687 0.82 -0.0 704,708 - +0.4 705,137 - +1.0 705,159 - +0.2 705,362 - HP15_688 0.66 -0.4 705,823 - HP15_690 0.31 -0.6 705,823 - HP15_690 0.31 -0.4 705,848 - HP15_690 0.38 +0.0 705,907 - HP15_690 0.56 +1.6 706,144 - HP15_691 0.50 +0.0 706,167 - HP15_691 0.61 -0.8 706,507 - HP15_692 0.40 +0.2 706,658 - HP15_692 0.65 -1.2 706,725 - HP15_692 0.75 +1.9
Or see this region's nucleotide sequence