Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_645 and HP15_646 are separated by 232 nucleotides HP15_646 and HP15_647 are separated by 153 nucleotides HP15_647 and HP15_648 are separated by 436 nucleotides
HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187
_645
HP15_646: HP15_646 - hypothetical protein, at 669,420 to 669,770
_646
HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652
_647
HP15_648: HP15_648 - phage late control D, at 671,089 to 672,087
_648
Position (kb) 669
670
671 Strain fitness (log2 ratio) -1
0
1
2
3 at 669.023 kb on + strand, within HP15_645 at 669.278 kb on + strand at 669.278 kb on + strand at 669.286 kb on + strand at 669.286 kb on - strand at 669.329 kb on + strand at 669.364 kb on + strand at 669.427 kb on + strand at 669.483 kb on + strand, within HP15_646 at 669.483 kb on + strand, within HP15_646 at 669.491 kb on - strand, within HP15_646 at 669.564 kb on - strand, within HP15_646 at 669.705 kb on - strand, within HP15_646 at 669.737 kb on + strand at 669.798 kb on + strand at 670.220 kb on + strand, within HP15_647 at 670.293 kb on + strand, within HP15_647 at 670.363 kb on - strand, within HP15_647 at 670.378 kb on + strand, within HP15_647 at 670.386 kb on - strand, within HP15_647 at 670.405 kb on + strand, within HP15_647 at 670.423 kb on - strand, within HP15_647 at 670.448 kb on + strand, within HP15_647 at 670.499 kb on - strand, within HP15_647 at 670.516 kb on + strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.524 kb on - strand, within HP15_647 at 670.595 kb on + strand at 670.595 kb on + strand at 670.654 kb on - strand at 670.663 kb on + strand at 670.857 kb on + strand at 670.932 kb on + strand at 670.962 kb on - strand at 671.158 kb on - strand at 671.326 kb on - strand, within HP15_648 at 671.372 kb on + strand, within HP15_648 at 671.374 kb on - strand, within HP15_648 at 671.518 kb on - strand, within HP15_648 at 671.580 kb on + strand, within HP15_648 at 671.588 kb on - strand, within HP15_648 at 671.590 kb on + strand, within HP15_648 at 671.598 kb on - strand, within HP15_648 at 671.652 kb on + strand, within HP15_648
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 669,023 + HP15_645 0.76 +1.8 669,278 + -0.2 669,278 + -0.2 669,286 + -1.3 669,286 - -0.9 669,329 + +1.7 669,364 + -0.2 669,427 + +1.4 669,483 + HP15_646 0.18 +2.1 669,483 + HP15_646 0.18 +1.6 669,491 - HP15_646 0.20 -1.2 669,564 - HP15_646 0.41 -0.0 669,705 - HP15_646 0.81 +0.4 669,737 + +0.7 669,798 + +1.8 670,220 + HP15_647 0.41 +1.8 670,293 + HP15_647 0.51 +0.2 670,363 - HP15_647 0.60 +2.9 670,378 + HP15_647 0.62 -0.4 670,386 - HP15_647 0.63 -0.2 670,405 + HP15_647 0.66 -0.6 670,423 - HP15_647 0.68 +1.2 670,448 + HP15_647 0.72 -0.0 670,499 - HP15_647 0.79 +0.3 670,516 + HP15_647 0.81 -0.1 670,519 - HP15_647 0.82 +0.2 670,519 - HP15_647 0.82 +0.1 670,524 - HP15_647 0.82 +1.1 670,595 + -0.2 670,595 + +1.3 670,654 - +0.0 670,663 + -0.2 670,857 + -0.1 670,932 + +0.9 670,962 - +2.0 671,158 - -0.1 671,326 - HP15_648 0.24 +1.6 671,372 + HP15_648 0.28 +0.3 671,374 - HP15_648 0.29 -0.4 671,518 - HP15_648 0.43 +2.4 671,580 + HP15_648 0.49 +0.8 671,588 - HP15_648 0.50 +1.8 671,590 + HP15_648 0.50 -0.4 671,598 - HP15_648 0.51 +0.2 671,652 + HP15_648 0.56 -0.7
Or see this region's nucleotide sequence