Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g171 and HP15_p187g172 overlap by 4 nucleotides HP15_p187g172 and HP15_p187g173 overlap by 4 nucleotides
HP15_p187g171: HP15_p187g171 - hypothetical protein, at 176,404 to 177,306
_p187g171
HP15_p187g172: HP15_p187g172 - single-stranded-DNA-specific exonuclease RecJ-like protein, at 177,303 to 179,270
_p187g172
HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339
_p187g173
Position (kb) 177
178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.332 kb on + strand at 176.332 kb on + strand at 176.332 kb on + strand at 176.332 kb on + strand at 176.332 kb on + strand at 176.332 kb on + strand at 176.340 kb on - strand at 176.340 kb on - strand at 176.352 kb on - strand at 176.366 kb on + strand at 176.371 kb on + strand at 176.371 kb on + strand at 176.386 kb on + strand at 176.443 kb on - strand at 176.464 kb on - strand at 176.620 kb on - strand, within HP15_p187g171 at 176.626 kb on + strand, within HP15_p187g171 at 176.659 kb on + strand, within HP15_p187g171 at 176.659 kb on + strand, within HP15_p187g171 at 176.659 kb on + strand, within HP15_p187g171 at 176.666 kb on + strand, within HP15_p187g171 at 176.667 kb on - strand, within HP15_p187g171 at 176.667 kb on - strand, within HP15_p187g171 at 176.667 kb on - strand, within HP15_p187g171 at 176.667 kb on - strand, within HP15_p187g171 at 176.667 kb on - strand, within HP15_p187g171 at 176.697 kb on + strand, within HP15_p187g171 at 176.744 kb on - strand, within HP15_p187g171 at 176.753 kb on - strand, within HP15_p187g171 at 176.791 kb on + strand, within HP15_p187g171 at 176.798 kb on + strand, within HP15_p187g171 at 176.798 kb on + strand, within HP15_p187g171 at 176.806 kb on - strand, within HP15_p187g171 at 176.806 kb on - strand, within HP15_p187g171 at 176.816 kb on - strand, within HP15_p187g171 at 176.817 kb on - strand, within HP15_p187g171 at 176.817 kb on - strand, within HP15_p187g171 at 176.819 kb on + strand, within HP15_p187g171 at 176.819 kb on + strand, within HP15_p187g171 at 176.819 kb on + strand, within HP15_p187g171 at 176.819 kb on + strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.827 kb on - strand, within HP15_p187g171 at 176.855 kb on + strand, within HP15_p187g171 at 176.935 kb on - strand, within HP15_p187g171 at 177.068 kb on + strand, within HP15_p187g171 at 177.100 kb on + strand, within HP15_p187g171 at 177.200 kb on + strand, within HP15_p187g171 at 177.208 kb on - strand, within HP15_p187g171 at 177.210 kb on + strand, within HP15_p187g171 at 177.255 kb on + strand at 177.281 kb on + strand at 177.281 kb on + strand at 177.281 kb on + strand at 177.281 kb on + strand at 177.301 kb on - strand at 177.301 kb on - strand at 177.467 kb on + strand at 177.475 kb on - strand at 177.526 kb on - strand, within HP15_p187g172 at 177.581 kb on + strand, within HP15_p187g172 at 177.581 kb on + strand, within HP15_p187g172 at 177.589 kb on - strand, within HP15_p187g172 at 177.591 kb on + strand, within HP15_p187g172 at 177.658 kb on + strand, within HP15_p187g172 at 177.666 kb on - strand, within HP15_p187g172 at 177.666 kb on - strand, within HP15_p187g172 at 177.666 kb on - strand, within HP15_p187g172 at 177.689 kb on + strand, within HP15_p187g172 at 177.726 kb on + strand, within HP15_p187g172 at 177.734 kb on - strand, within HP15_p187g172 at 177.734 kb on - strand, within HP15_p187g172 at 177.736 kb on + strand, within HP15_p187g172 at 177.744 kb on - strand, within HP15_p187g172 at 177.744 kb on - strand, within HP15_p187g172 at 177.744 kb on - strand, within HP15_p187g172 at 177.744 kb on - strand, within HP15_p187g172 at 177.764 kb on + strand, within HP15_p187g172 at 177.764 kb on + strand, within HP15_p187g172 at 177.771 kb on + strand, within HP15_p187g172 at 177.805 kb on + strand, within HP15_p187g172 at 177.816 kb on - strand, within HP15_p187g172 at 177.827 kb on + strand, within HP15_p187g172 at 177.847 kb on + strand, within HP15_p187g172 at 177.847 kb on + strand, within HP15_p187g172 at 177.855 kb on - strand, within HP15_p187g172 at 177.879 kb on - strand, within HP15_p187g172 at 177.955 kb on - strand, within HP15_p187g172 at 177.991 kb on + strand, within HP15_p187g172 at 178.013 kb on + strand, within HP15_p187g172 at 178.025 kb on + strand, within HP15_p187g172 at 178.025 kb on + strand, within HP15_p187g172 at 178.025 kb on + strand, within HP15_p187g172 at 178.025 kb on + strand, within HP15_p187g172 at 178.025 kb on + strand, within HP15_p187g172 at 178.033 kb on - strand, within HP15_p187g172 at 178.033 kb on - strand, within HP15_p187g172 at 178.035 kb on - strand, within HP15_p187g172 at 178.035 kb on - strand, within HP15_p187g172 at 178.075 kb on + strand, within HP15_p187g172 at 178.088 kb on + strand, within HP15_p187g172 at 178.088 kb on + strand, within HP15_p187g172 at 178.088 kb on + strand, within HP15_p187g172 at 178.088 kb on + strand, within HP15_p187g172 at 178.096 kb on - strand, within HP15_p187g172 at 178.096 kb on - strand, within HP15_p187g172 at 178.096 kb on - strand, within HP15_p187g172 at 178.096 kb on - strand, within HP15_p187g172 at 178.102 kb on + strand, within HP15_p187g172 at 178.110 kb on - strand, within HP15_p187g172 at 178.110 kb on - strand, within HP15_p187g172 at 178.122 kb on - strand, within HP15_p187g172 at 178.200 kb on - strand, within HP15_p187g172 at 178.226 kb on + strand, within HP15_p187g172 at 178.241 kb on + strand, within HP15_p187g172 at 178.243 kb on + strand, within HP15_p187g172 at 178.249 kb on - strand, within HP15_p187g172 at 178.264 kb on - strand, within HP15_p187g172 at 178.266 kb on - strand, within HP15_p187g172 at 178.291 kb on + strand, within HP15_p187g172 at 178.298 kb on - strand, within HP15_p187g172 at 178.318 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.351 kb on - strand, within HP15_p187g172 at 178.360 kb on + strand, within HP15_p187g172 at 178.360 kb on - strand, within HP15_p187g172 at 178.363 kb on - strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.406 kb on + strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.414 kb on - strand, within HP15_p187g172 at 178.459 kb on - strand, within HP15_p187g172 at 178.488 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.552 kb on + strand, within HP15_p187g172 at 178.560 kb on - strand, within HP15_p187g172 at 178.625 kb on + strand, within HP15_p187g172 at 178.630 kb on + strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.638 kb on - strand, within HP15_p187g172 at 178.655 kb on - strand, within HP15_p187g172 at 178.678 kb on + strand, within HP15_p187g172 at 178.686 kb on - strand, within HP15_p187g172 at 178.861 kb on - strand, within HP15_p187g172 at 178.906 kb on + strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.914 kb on - strand, within HP15_p187g172 at 178.939 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.941 kb on - strand, within HP15_p187g172 at 178.952 kb on + strand, within HP15_p187g172 at 178.960 kb on - strand, within HP15_p187g172 at 178.967 kb on + strand, within HP15_p187g172 at 178.977 kb on + strand, within HP15_p187g172 at 178.978 kb on - strand, within HP15_p187g172 at 178.985 kb on - strand, within HP15_p187g172 at 178.994 kb on - strand, within HP15_p187g172 at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.124 kb on + strand at 179.132 kb on - strand at 179.132 kb on - strand at 179.212 kb on - strand at 179.255 kb on + strand at 179.258 kb on - strand at 179.258 kb on - strand at 179.297 kb on + strand at 179.407 kb on - strand at 179.415 kb on + strand at 179.415 kb on + strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.423 kb on - strand at 179.425 kb on + strand at 179.446 kb on - strand at 179.466 kb on + strand at 179.474 kb on - strand at 179.474 kb on - strand at 179.507 kb on + strand, within HP15_p187g173 at 179.584 kb on - strand, within HP15_p187g173 at 179.676 kb on - strand, within HP15_p187g173 at 179.695 kb on - strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.776 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.816 kb on + strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.824 kb on - strand, within HP15_p187g173 at 179.837 kb on + strand, within HP15_p187g173 at 179.847 kb on - strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.867 kb on + strand, within HP15_p187g173 at 179.877 kb on + strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.910 kb on - strand, within HP15_p187g173 at 179.928 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.938 kb on - strand, within HP15_p187g173 at 179.969 kb on - strand, within HP15_p187g173 at 180.009 kb on - strand, within HP15_p187g173 at 180.016 kb on + strand, within HP15_p187g173 at 180.129 kb on - strand, within HP15_p187g173 at 180.162 kb on + strand, within HP15_p187g173 at 180.206 kb on - strand, within HP15_p187g173
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 176,332 + +0.0 176,332 + -0.7 176,332 + -0.8 176,332 + -0.3 176,332 + +0.7 176,332 + -1.5 176,340 - +0.4 176,340 - +0.6 176,352 - +1.5 176,366 + -0.3 176,371 + -0.5 176,371 + -0.5 176,386 + +1.8 176,443 - +1.8 176,464 - +2.5 176,620 - HP15_p187g171 0.24 +0.1 176,626 + HP15_p187g171 0.25 -0.3 176,659 + HP15_p187g171 0.28 +0.2 176,659 + HP15_p187g171 0.28 +0.2 176,659 + HP15_p187g171 0.28 -0.1 176,666 + HP15_p187g171 0.29 -0.4 176,667 - HP15_p187g171 0.29 -0.6 176,667 - HP15_p187g171 0.29 -0.3 176,667 - HP15_p187g171 0.29 +0.7 176,667 - HP15_p187g171 0.29 +0.2 176,667 - HP15_p187g171 0.29 -0.0 176,697 + HP15_p187g171 0.32 +1.2 176,744 - HP15_p187g171 0.38 -0.8 176,753 - HP15_p187g171 0.39 +1.9 176,791 + HP15_p187g171 0.43 +0.0 176,798 + HP15_p187g171 0.44 -0.6 176,798 + HP15_p187g171 0.44 -0.2 176,806 - HP15_p187g171 0.45 -0.7 176,806 - HP15_p187g171 0.45 +1.1 176,816 - HP15_p187g171 0.46 +0.4 176,817 - HP15_p187g171 0.46 -0.4 176,817 - HP15_p187g171 0.46 +0.8 176,819 + HP15_p187g171 0.46 +1.2 176,819 + HP15_p187g171 0.46 +0.9 176,819 + HP15_p187g171 0.46 +0.1 176,819 + HP15_p187g171 0.46 -1.3 176,827 - HP15_p187g171 0.47 -0.8 176,827 - HP15_p187g171 0.47 +1.7 176,827 - HP15_p187g171 0.47 +0.3 176,827 - HP15_p187g171 0.47 +0.1 176,827 - HP15_p187g171 0.47 -0.4 176,827 - HP15_p187g171 0.47 -0.8 176,827 - HP15_p187g171 0.47 +1.5 176,855 + HP15_p187g171 0.50 +2.0 176,935 - HP15_p187g171 0.59 -0.1 177,068 + HP15_p187g171 0.74 +0.7 177,100 + HP15_p187g171 0.77 -0.2 177,200 + HP15_p187g171 0.88 +1.4 177,208 - HP15_p187g171 0.89 +0.8 177,210 + HP15_p187g171 0.89 +1.7 177,255 + -1.6 177,281 + +0.2 177,281 + +1.7 177,281 + -0.8 177,281 + +0.0 177,301 - +1.6 177,301 - +0.4 177,467 + +1.2 177,475 - -0.5 177,526 - HP15_p187g172 0.11 -0.0 177,581 + HP15_p187g172 0.14 +1.8 177,581 + HP15_p187g172 0.14 +0.8 177,589 - HP15_p187g172 0.15 +1.7 177,591 + HP15_p187g172 0.15 -1.2 177,658 + HP15_p187g172 0.18 -1.6 177,666 - HP15_p187g172 0.18 -0.5 177,666 - HP15_p187g172 0.18 -0.0 177,666 - HP15_p187g172 0.18 -0.6 177,689 + HP15_p187g172 0.20 -0.0 177,726 + HP15_p187g172 0.21 -0.9 177,734 - HP15_p187g172 0.22 +2.5 177,734 - HP15_p187g172 0.22 +0.2 177,736 + HP15_p187g172 0.22 +1.6 177,744 - HP15_p187g172 0.22 +2.0 177,744 - HP15_p187g172 0.22 +2.0 177,744 - HP15_p187g172 0.22 +1.3 177,744 - HP15_p187g172 0.22 -0.7 177,764 + HP15_p187g172 0.23 -0.4 177,764 + HP15_p187g172 0.23 +1.7 177,771 + HP15_p187g172 0.24 +0.7 177,805 + HP15_p187g172 0.26 -0.8 177,816 - HP15_p187g172 0.26 +0.6 177,827 + HP15_p187g172 0.27 +2.0 177,847 + HP15_p187g172 0.28 -2.1 177,847 + HP15_p187g172 0.28 +0.7 177,855 - HP15_p187g172 0.28 +0.9 177,879 - HP15_p187g172 0.29 +0.4 177,955 - HP15_p187g172 0.33 +3.2 177,991 + HP15_p187g172 0.35 -0.7 178,013 + HP15_p187g172 0.36 -1.2 178,025 + HP15_p187g172 0.37 -1.0 178,025 + HP15_p187g172 0.37 -0.5 178,025 + HP15_p187g172 0.37 -0.4 178,025 + HP15_p187g172 0.37 +0.2 178,025 + HP15_p187g172 0.37 -1.7 178,033 - HP15_p187g172 0.37 -1.4 178,033 - HP15_p187g172 0.37 +1.9 178,035 - HP15_p187g172 0.37 +0.5 178,035 - HP15_p187g172 0.37 +2.0 178,075 + HP15_p187g172 0.39 +1.3 178,088 + HP15_p187g172 0.40 -0.7 178,088 + HP15_p187g172 0.40 +1.8 178,088 + HP15_p187g172 0.40 -0.2 178,088 + HP15_p187g172 0.40 +0.9 178,096 - HP15_p187g172 0.40 +0.5 178,096 - HP15_p187g172 0.40 -1.2 178,096 - HP15_p187g172 0.40 -0.1 178,096 - HP15_p187g172 0.40 +1.8 178,102 + HP15_p187g172 0.41 +1.2 178,110 - HP15_p187g172 0.41 +0.5 178,110 - HP15_p187g172 0.41 +0.0 178,122 - HP15_p187g172 0.42 -0.1 178,200 - HP15_p187g172 0.46 +0.8 178,226 + HP15_p187g172 0.47 -0.7 178,241 + HP15_p187g172 0.48 -0.0 178,243 + HP15_p187g172 0.48 +0.2 178,249 - HP15_p187g172 0.48 +0.1 178,264 - HP15_p187g172 0.49 +1.8 178,266 - HP15_p187g172 0.49 +2.0 178,291 + HP15_p187g172 0.50 -0.0 178,298 - HP15_p187g172 0.51 +2.1 178,318 - HP15_p187g172 0.52 +0.5 178,351 - HP15_p187g172 0.53 -0.2 178,351 - HP15_p187g172 0.53 +1.6 178,360 + HP15_p187g172 0.54 +2.0 178,360 - HP15_p187g172 0.54 +0.8 178,363 - HP15_p187g172 0.54 +2.0 178,406 + HP15_p187g172 0.56 +0.1 178,406 + HP15_p187g172 0.56 +1.4 178,414 - HP15_p187g172 0.56 +1.3 178,414 - HP15_p187g172 0.56 -0.7 178,414 - HP15_p187g172 0.56 +0.1 178,459 - HP15_p187g172 0.59 -0.1 178,488 + HP15_p187g172 0.60 -0.1 178,552 + HP15_p187g172 0.63 -0.1 178,552 + HP15_p187g172 0.63 +1.3 178,560 - HP15_p187g172 0.64 +0.6 178,625 + HP15_p187g172 0.67 -1.8 178,630 + HP15_p187g172 0.67 +0.1 178,638 - HP15_p187g172 0.68 +1.9 178,638 - HP15_p187g172 0.68 +0.8 178,638 - HP15_p187g172 0.68 +1.9 178,655 - HP15_p187g172 0.69 +1.7 178,678 + HP15_p187g172 0.70 -0.3 178,686 - HP15_p187g172 0.70 -0.5 178,861 - HP15_p187g172 0.79 +1.0 178,906 + HP15_p187g172 0.81 -0.1 178,914 - HP15_p187g172 0.82 -0.2 178,914 - HP15_p187g172 0.82 +0.3 178,939 - HP15_p187g172 0.83 +0.4 178,941 - HP15_p187g172 0.83 +0.4 178,941 - HP15_p187g172 0.83 +1.5 178,952 + HP15_p187g172 0.84 +1.5 178,960 - HP15_p187g172 0.84 -0.7 178,967 + HP15_p187g172 0.85 +1.6 178,977 + HP15_p187g172 0.85 +1.6 178,978 - HP15_p187g172 0.85 +1.5 178,985 - HP15_p187g172 0.85 -0.0 178,994 - HP15_p187g172 0.86 +0.7 179,124 + -1.1 179,124 + +0.0 179,124 + +1.8 179,124 + -0.9 179,124 + +1.5 179,132 - +0.4 179,132 - +1.2 179,212 - -0.9 179,255 + +1.8 179,258 - -0.6 179,258 - -1.6 179,297 + +0.1 179,407 - +1.7 179,415 + +1.6 179,415 + +0.8 179,423 - -1.6 179,423 - -0.6 179,423 - +0.2 179,423 - +0.0 179,425 + -0.0 179,446 - -0.2 179,466 + +2.0 179,474 - -0.7 179,474 - -0.5 179,507 + HP15_p187g173 0.12 -0.3 179,584 - HP15_p187g173 0.15 -0.7 179,676 - HP15_p187g173 0.20 -1.3 179,695 - HP15_p187g173 0.21 +1.6 179,776 + HP15_p187g173 0.25 +1.2 179,776 + HP15_p187g173 0.25 -0.4 179,816 + HP15_p187g173 0.26 -0.2 179,816 + HP15_p187g173 0.26 -2.7 179,816 + HP15_p187g173 0.26 +1.9 179,816 + HP15_p187g173 0.26 +1.4 179,824 - HP15_p187g173 0.27 +1.6 179,824 - HP15_p187g173 0.27 +1.3 179,824 - HP15_p187g173 0.27 +0.6 179,824 - HP15_p187g173 0.27 -0.1 179,837 + HP15_p187g173 0.27 +1.5 179,847 - HP15_p187g173 0.28 +1.9 179,867 + HP15_p187g173 0.29 +1.7 179,867 + HP15_p187g173 0.29 +1.7 179,877 + HP15_p187g173 0.29 -1.3 179,910 - HP15_p187g173 0.31 -0.5 179,910 - HP15_p187g173 0.31 +1.1 179,928 - HP15_p187g173 0.32 +0.3 179,938 - HP15_p187g173 0.32 +1.8 179,938 - HP15_p187g173 0.32 +1.9 179,969 - HP15_p187g173 0.34 +1.8 180,009 - HP15_p187g173 0.36 -1.2 180,016 + HP15_p187g173 0.36 -0.7 180,129 - HP15_p187g173 0.42 -0.3 180,162 + HP15_p187g173 0.43 -0.1 180,206 - HP15_p187g173 0.45 -0.2
Or see this region's nucleotide sequence