Strain Fitness in Marinobacter adhaerens HP15 around HP15_3722

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3721 and HP15_3722 are separated by 76 nucleotidesHP15_3722 and HP15_3723 are separated by 519 nucleotides HP15_3721: HP15_3721 - Rad3-related DNA helicase, at 3,935,668 to 3,937,965 _3721 HP15_3722: HP15_3722 - hypothetical protein, at 3,938,042 to 3,938,428 _3722 HP15_3723: HP15_3723 - PTS system, glucose-specific EIIA/HPr/phosphoenolpyruvate-protein phosphotransferase components, at 3,938,948 to 3,941,884 _3723 Position (kb) 3938 3939Strain fitness (log2 ratio) -2 -1 0 1 2at 3937.118 kb on + strand, within HP15_3721at 3937.155 kb on - strand, within HP15_3721at 3937.246 kb on + strand, within HP15_3721at 3937.309 kb on + strand, within HP15_3721at 3937.350 kb on + strand, within HP15_3721at 3937.398 kb on - strand, within HP15_3721at 3937.563 kb on - strand, within HP15_3721at 3937.594 kb on + strand, within HP15_3721at 3937.611 kb on - strand, within HP15_3721at 3937.618 kb on + strand, within HP15_3721at 3937.622 kb on + strand, within HP15_3721at 3937.625 kb on - strand, within HP15_3721at 3937.695 kb on - strand, within HP15_3721at 3937.724 kb on + strand, within HP15_3721at 3937.765 kb on + strandat 3937.829 kb on + strandat 3937.928 kb on + strandat 3937.928 kb on - strandat 3938.020 kb on + strandat 3938.069 kb on - strandat 3938.174 kb on - strand, within HP15_3722at 3938.174 kb on - strand, within HP15_3722at 3938.195 kb on - strand, within HP15_3722at 3938.195 kb on - strand, within HP15_3722at 3938.253 kb on - strand, within HP15_3722at 3938.274 kb on + strand, within HP15_3722at 3938.282 kb on - strand, within HP15_3722at 3938.295 kb on - strand, within HP15_3722at 3938.322 kb on - strand, within HP15_3722at 3938.322 kb on - strand, within HP15_3722at 3938.398 kb on + strandat 3938.398 kb on + strandat 3938.424 kb on + strandat 3938.456 kb on - strandat 3938.657 kb on - strandat 3938.742 kb on + strandat 3938.750 kb on - strandat 3938.750 kb on - strandat 3938.822 kb on + strandat 3938.957 kb on + strandat 3939.043 kb on + strandat 3939.126 kb on - strandat 3939.209 kb on + strandat 3939.209 kb on + strandat 3939.209 kb on + strandat 3939.209 kb on + strandat 3939.209 kb on + strandat 3939.217 kb on - strandat 3939.217 kb on - strandat 3939.217 kb on - strandat 3939.217 kb on - strandat 3939.217 kb on - strandat 3939.217 kb on - strandat 3939.235 kb on + strandat 3939.343 kb on - strand, within HP15_3723at 3939.348 kb on + strand, within HP15_3723at 3939.348 kb on + strand, within HP15_3723at 3939.356 kb on - strand, within HP15_3723at 3939.408 kb on + strand, within HP15_3723at 3939.411 kb on - strand, within HP15_3723at 3939.416 kb on - strand, within HP15_3723at 3939.416 kb on - strand, within HP15_3723at 3939.419 kb on + strand, within HP15_3723

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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3,937,118 + HP15_3721 0.63 +0.3
3,937,155 - HP15_3721 0.65 +0.3
3,937,246 + HP15_3721 0.69 +0.2
3,937,309 + HP15_3721 0.71 +0.2
3,937,350 + HP15_3721 0.73 -0.7
3,937,398 - HP15_3721 0.75 +1.4
3,937,563 - HP15_3721 0.82 +1.6
3,937,594 + HP15_3721 0.84 -0.4
3,937,611 - HP15_3721 0.85 +0.5
3,937,618 + HP15_3721 0.85 +0.9
3,937,622 + HP15_3721 0.85 +2.0
3,937,625 - HP15_3721 0.85 -0.9
3,937,695 - HP15_3721 0.88 +1.9
3,937,724 + HP15_3721 0.89 -0.5
3,937,765 + +1.5
3,937,829 + +1.7
3,937,928 + +0.7
3,937,928 - +1.4
3,938,020 + -0.2
3,938,069 - -0.0
3,938,174 - HP15_3722 0.34 -0.6
3,938,174 - HP15_3722 0.34 -1.1
3,938,195 - HP15_3722 0.40 +0.1
3,938,195 - HP15_3722 0.40 -0.7
3,938,253 - HP15_3722 0.55 +1.3
3,938,274 + HP15_3722 0.60 -0.6
3,938,282 - HP15_3722 0.62 -0.3
3,938,295 - HP15_3722 0.65 -0.3
3,938,322 - HP15_3722 0.72 -0.8
3,938,322 - HP15_3722 0.72 -1.9
3,938,398 + +0.9
3,938,398 + +1.9
3,938,424 + +1.1
3,938,456 - -1.1
3,938,657 - -1.1
3,938,742 + -0.1
3,938,750 - -0.4
3,938,750 - +1.4
3,938,822 + -0.1
3,938,957 + -0.4
3,939,043 + -0.5
3,939,126 - -0.3
3,939,209 + +1.2
3,939,209 + -0.5
3,939,209 + -1.1
3,939,209 + -0.3
3,939,209 + -1.5
3,939,217 - +0.2
3,939,217 - -0.2
3,939,217 - -0.6
3,939,217 - +1.7
3,939,217 - -0.2
3,939,217 - -0.5
3,939,235 + -0.5
3,939,343 - HP15_3723 0.13 +0.3
3,939,348 + HP15_3723 0.14 +0.2
3,939,348 + HP15_3723 0.14 -0.4
3,939,356 - HP15_3723 0.14 +0.1
3,939,408 + HP15_3723 0.16 +0.0
3,939,411 - HP15_3723 0.16 +1.0
3,939,416 - HP15_3723 0.16 +1.7
3,939,416 - HP15_3723 0.16 -0.6
3,939,419 + HP15_3723 0.16 +2.2

Or see this region's nucleotide sequence